RNA id: TU105402


Basic Information

Item Value
RNA id TU105402
length 2931
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G78172
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 4477866 ~ 4490654 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagtttaaACTTCCGTTACCTACGCTCCCTTTGAGATCCTATAGTTTAGAGTGACAGCCCTCCTAGGCacttgccacacacacacacacacacaggaaaaaaaactgaggggaaaaaaactctaaaagGTTTCGGAAACCTATATATATTCTCAAatactgttaatttaataatacatattactCCAAAACAATTGATTtgaatcagagactgtaaaaaaagacaatgaaaatgaagccaaaatcttcctccatgttggcgatccggaaacccgagtctgtagagcgcagtagagaccagaggagggagaaagactgtggagagacagcctactcatttaaataaccccgcccctgagggctgcctcgaggtcacaggctgcagagcggagcggagatgacggtctgttattggtcccgcccataaccagctcttttacaataaccacacctttttaaatagagctgaataacgttttaaaaaacgaattctgtggggatataaaaatttaacaatataagcagaggttacactagctgctgtaTTTAAATAGTGGAGgtagaattacagtatattggaaaaaaacatgaCCTACGGGGATGGGTGCGGTtgcacagctttctgcaaccaaacAGCAGAGGGCGCCCGACCTGGGGTAGATTCACCTTTGAGAGACGATGCCCTGTCCagatatacacagtctatggtttgaaCATTTAAATATCTTGTCTACTTAGCGTATTCAATTAAATATAAGTTGAAAAGGGTTTGCAAATCAacgtattctgtttttatttatgttttacacaacaCTTCAACTTTTTCAGAATTAGGGTTTTAAGAGCTAAAACCTTGGAGCTTAACAAACATGCATTTTGTAAGAAAATTGGCTTTAATTCAAATGAAAGAAGCAATTCTGTGGTTTTAGTTTGTGATTAGTTGACGCATttagctgtctgtctgtccagctgggattttttttcacttccaTGGTTTTATCTATATAACAGAGTTGCTTTTTGCTGTACAttcctgaatatatatatattctgcacCTTAATTTTAAAGAGCACATCCCAAAATGCCATGACTTGGTACTTGTCTGTCTTTTACCGAGCTAGCTGGCAGTACCACAAACGAACTGCCAGAGGAAGTGAGTCGAACGGGCAAAGCGCGACTTAAGAAACCAACCTAACCTGGGCCCAAAAGTGTAGTAGCATTTTAACTGTTACATAGTGCTTTCTAAGCAACGatatttctcattatttttgtGCTGCATTTGCAGAGAATTACAAAACTCGAGATTTCTTAAAGGCTACTTCATGGTAATCAGCTCAAAAAGGCTTGAAAATGCCAAATTCTAATACtgggggccctattttagcaattttagggcgtcagtgtgtctttgctatcataacgtcaggaaaagtacactttgcgcGACTCAACATGAGCAAAAGGCATGTGTTAATTCTCttgattaatcatgggtgtgttttgggcataacgtgataATAATTTCActttccattccctttaagagccaggtactCTGAcagactttggcggattggtattttaacggcgcagcagATCAaactgacctgcgtgttcatgctgtaaaggtgcgtgagcaggtcatttaaaggaacagcaatgttattttattctgtattatgtttattgttaatgtaaaagttgttaGCTTAGACAAGATAGAAATGGACACCTGAATGTCGACAgctgtcagggtttaaatcagtcagtggcgcacctgtgttttctgctgcgaAAAGATacaaacatgccagaaatgtacttgACCACTCCTTACTATTTTAACGGTGTGGGCACAAGGtgtaaaaatatactgttgaaggggtgtaagatagcaatcaACATTATGACACACGCCTTGCGCAgagtgtacaatagggcccctGGTCATGCATGTTTTAGTACTTTAAGTATCTTTTTACATCTTTAAGTTTATACGTTCGTAATGTTTTGCTCTATGTTCGGAACCATAAGGACTGTTACCTGcatcaatacatttaaaacataaaacatacaaaacatcCGAGTGCCTTTAGGACTGGTGTGAGGAGGATGTGTGATTTATAGATTTGAAGACAGGGAGTGATAACtgcaaatgaatgaatgactgaCTGCTGTTGTGCAACTTGGATGAACATACTGTTCATACATTCTTCTGCATATgttaacatatatataacatatactcACGGACATTCACGGAGAAACACACACCAGGGCGAGGCTGACGCATTGATTGTTCCTTTGTTTCGGATTCTCTTTTAGAGGCGAATGAATTCctgttgttttgtacattttattcagCTACCTAGAAAGCACTTCCTGAAAACTTGaaagctgtttgtgtgtgtgtgtttgtgtgagtgtgtgtgtgtgtatgtatgtatatagttAGTTACGAGACATGTGACCATAGCATGCTTATAATGCGTATATTGGGGCAGTCGTTTTATTTTCTTATGTAGAGGTGTCTTTTCTGTACCATTGTTTAAACTTCTACTCGTCTTTGCTCCAGGCTTTCTAACAATAATTACTTGAGCACTgtagatataataaaatctaatctaatataatataaaattgccctaaaaacacaacaaacacacagcaaCCAACACACAGTTTTCTGCTGAGGATTAAAGATGTCAGTTCATGTTTTGTTACTCTTGTGCTTTATTGTGTGTTGATGTTAATCCACAAATagactttatgtatgaaaaagaacagataataatatttgttttatttatctctACTACTCTACCTTCTGTTTACTgtactattacaattacaaaacaCCTAGCTTTACTTAAGCTTcccaaaatattattattttaacatggtaagTGTCCTTTTCATATATGACCTGTA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105341 lncRNA upstream 124589 4351453 ~ 4353277 (+) True G78122
TU105335 lncRNA upstream 157539 4318054 ~ 4320327 (+) True G78117
XR_002650303.1 lncRNA upstream 191635 4278111 ~ 4286231 (+) True LOC111193172
TU105273 lncRNA upstream 318549 4158517 ~ 4159317 (+) True G78066
TU105276 lncRNA upstream 320001 4154743 ~ 4157865 (+) True G78068
TU105536 lncRNA downstream 714428 5205082 ~ 5207413 (+) True G78283
TU105535 lncRNA downstream 802101 5292755 ~ 5294206 (+) True G78282
TU105673 lncRNA downstream 2066579 6557233 ~ 6563936 (+) False G78397
TU105674 lncRNA downstream 2066844 6557498 ~ 6563936 (+) True G78397
TU105686 lncRNA downstream 2134047 6624701 ~ 6627742 (+) True G78408
XM_007258903.3 mRNA upstream 90361 4380307 ~ 4387505 (+) True LOC103042329
XM_007258894.2 mRNA upstream 113062 4354756 ~ 4364804 (+) True mok
XM_007258895.3 mRNA upstream 113062 4355567 ~ 4364804 (+) False mok
XM_007258893.3 mRNA upstream 148361 4322554 ~ 4329505 (+) True klhdc2
XM_007258891.3 mRNA upstream 164078 4310317 ~ 4313788 (+) True dnaaf2
XM_022672463.1 mRNA downstream 83622 4574276 ~ 4590198 (+) True begain
XM_007258905.3 mRNA downstream 111287 4601941 ~ 4609185 (+) False wars
XM_007258906.3 mRNA downstream 111417 4602071 ~ 4609185 (+) True wars
XM_007258912.3 mRNA downstream 159500 4650154 ~ 4659702 (+) True LOC103044998
XM_007258935.3 mRNA downstream 688983 5179637 ~ 5202441 (+) False kdm1a
TU105324 other upstream 179682 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 1057867 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 1060955 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 1061626 3416168 ~ 3416240 (+) True trnav-aac_2
TU104828 other upstream 1499772 2900134 ~ 2978094 (+) False G77722
TU105595 other downstream 961461 5452115 ~ 5527965 (+) False LOC103025550
TU105776 other downstream 2366755 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 3104053 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 3165675 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 3165675 7656329 ~ 7729001 (+) False fam167b

Expression Profile