RNA id: TU105673


Basic Information

Item Value
RNA id TU105673
length 346
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id G78397
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6557233 ~ 6563936 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacagactctgtaataaaacaaataatgaaatataccactttaaataatacttttttcctgattatttcatttacacaccattttacttgacttactatctttatctttgacagtgttgtgtaaactaagatttttcaaattgatgtttaatttcatgatgtctcttaatataaaactccttaattacggcaacttttagactccgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgtttctgacacctagcattcaaactttgaatctcacattataaaaacctgcttaacagcgggccaactttcattctatttctaaaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105535 lncRNA upstream 1263027 5292755 ~ 5294206 (+) True G78282
TU105536 lncRNA upstream 1349820 5205082 ~ 5207413 (+) True G78283
TU105402 lncRNA upstream 2066579 4477866 ~ 4490654 (+) True G78172
TU105341 lncRNA upstream 2203956 4351453 ~ 4353277 (+) True G78122
TU105335 lncRNA upstream 2236906 4318054 ~ 4320327 (+) True G78117
TU105686 lncRNA downstream 60765 6624701 ~ 6627742 (+) True G78408
TU105688 lncRNA downstream 109867 6673803 ~ 6674290 (+) True G78409
TU105694 lncRNA downstream 144600 6708536 ~ 6708828 (+) True G78414
TU105696 lncRNA downstream 149520 6713456 ~ 6716188 (+) True G78416
TU105708 lncRNA downstream 184043 6747979 ~ 6748536 (+) True G78425
XM_022672465.1 mRNA upstream 1027178 5452366 ~ 5530055 (+) True LOC103025550
XM_022672634.1 mRNA upstream 1116499 5345136 ~ 5440734 (+) True pacrg
XM_007258937.3 mRNA upstream 1267467 5282014 ~ 5289766 (+) True ptafr
XM_007258933.3 mRNA upstream 1354792 5179646 ~ 5202441 (+) True kdm1a
XM_022672635.1 mRNA downstream 64057 6627993 ~ 6683113 (+) True mrps5
XM_022672636.1 mRNA downstream 64070 6628006 ~ 6683113 (+) False mrps5
XM_022672640.1 mRNA downstream 209790 6773726 ~ 6826064 (+) True LOC103028352
XM_022672642.1 mRNA downstream 269649 6833585 ~ 6850452 (+) False LOC103028659
XM_022672641.1 mRNA downstream 272248 6836184 ~ 6850452 (+) True LOC103028659
TU105595 other upstream 1029268 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 2259049 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 3137234 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 3140322 3416839 ~ 3416911 (+) True trnav-aac_3
trnav-aac_2 other upstream 3140993 3416168 ~ 3416240 (+) True trnav-aac_2
TU105776 other downstream 293473 6857409 ~ 6861157 (+) False LOC103024862
TU106040 other downstream 1030771 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 1092393 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 1092393 7656329 ~ 7729001 (+) False fam167b
TU106244 other downstream 1971980 8535916 ~ 8537682 (+) True G78818

Expression Profile