RNA id: TU105848


Basic Information

Item Value
RNA id TU105848
length 684
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G78531
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 6927354 ~ 6928056 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCACAGTTAAGGCAAAAGAGGTAAGGCATTAGAAATACATATGCAATATTTCACACACATAACATACAATTAATAACAGAACttttaatcaaatacaaattaatacatgACTGcaattttctgttattttaatattatagctCTTATTTATGGACGCTATTCTGTGCATTCTTGGTAGTAAGGCACGAGGACACATCAGGCGAGATTAAAAATCTCTAATGTTTCAGCACCTAAAGCAACCAAATTCACTAGAAaccaaatataatttataaaatcagcattttataCCAGTATTCCAAAAGCTTGGTGTGTCTTGGTGTGTCAAGGCTCTGCAGTGTGCagtgttttaatgctttaactTTACACAATTCAACATTATAGAAGAACTAACCCATGTTATGACGCAGCCATCCAACACAAGATTTGAACATCTAGTGGCAAACTAGAGCAGGTCCCCATCAGGGtcatattatgaaaaaaaaacgatttactttttttgctgttttgctcTGAAATGACTTGGGATAACATCTTTCACACTGTGAAATGATAGTATTTCTAAACATATgaaatataatacatacatttataaaattccATTATAAAATTCAAATATGATGACACGTTTTCCATACACAACTGCgtgccctttttttttctttaagatttattaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105840 lncRNA upstream 3351 6917616 ~ 6924022 (+) True G78528
TU105833 lncRNA upstream 20726 6899882 ~ 6906647 (+) True G78521
TU105832 lncRNA upstream 21249 6899882 ~ 6906124 (+) False G78521
TU105780 lncRNA upstream 54968 6862977 ~ 6872405 (+) False LOC103024862
TU105770 lncRNA upstream 106811 6814777 ~ 6820562 (+) True G78470
TU105864 lncRNA downstream 40810 6968866 ~ 6969179 (+) True G78542
XR_002650305.1 lncRNA downstream 324076 7252132 ~ 7254917 (+) True LOC111193179
TU105945 lncRNA downstream 354595 7282651 ~ 7283864 (+) True G78602
TU105946 lncRNA downstream 391553 7319609 ~ 7321250 (+) True G78603
XR_455482.3 lncRNA downstream 415137 7343193 ~ 7346450 (+) True LOC103029755
XM_007230067.2 mRNA upstream 32796 6886115 ~ 6894577 (+) True LOC103028981
XM_007230056.3 mRNA upstream 43277 6872563 ~ 6884096 (+) True LOC103025489
XM_022672466.1 mRNA upstream 54968 6857354 ~ 6872405 (+) True LOC103024862
XM_022672642.1 mRNA upstream 76921 6833585 ~ 6850452 (+) False LOC103028659
XM_015606155.2 mRNA downstream 46859 6974915 ~ 7073508 (+) True hhat
XM_022672650.1 mRNA downstream 298434 7226490 ~ 7244752 (+) True LOC111193178
XM_007257595.3 mRNA downstream 327057 7255113 ~ 7277103 (+) True LOC103030509
XM_007257590.3 mRNA downstream 356792 7284848 ~ 7312292 (+) True rab3gap2
XM_007257592.3 mRNA downstream 356792 7284848 ~ 7312292 (+) False rab3gap2
TU105776 other upstream 66216 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 1399408 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 2629189 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 3507374 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 3510462 3416839 ~ 3416911 (+) True trnav-aac_3
TU106040 other downstream 666651 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 728273 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 728273 7656329 ~ 7729001 (+) False fam167b
TU106244 other downstream 1607860 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 1614072 8542128 ~ 8549968 (+) False G78817

Expression Profile