RNA id: TU106026


Basic Information

Item Value
RNA id TU106026
length 2118
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G78668
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7547456 ~ 7552368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCTGCCAGCAGTTTATTGATGAGAGCAGGATGGCATATGGCAAACATGCAGCGTTTACATGATCAGTGTGTACCCTGTGCTTTAGGCAAACTCAGGCTGATGGAGGctacaaaaagaaacaaaaaaaaggcacaaaactTCAGAACATTCATTATCTCAGACATCAGTGGAAGAAGGGAACACCTCTCTTCCTCCAAATGGGAACACGTTAAACTGAACGAAAccacaatacaacaccatataACACTGATCCTCAGAAGGCACCTGATTTAGTTCAGAGGACCAGGATTCACGACGGATACAAGCAAACGAATCGTTTGTCTAAGTGTGCTGAATATGTCATTATATTCCACTCCTTCATATGTACTGTAACTGCAGGTTAGTTTAGCCAGGCATCTTATCAGTGGTTCTCTTTATCTTGGACTTTGATAAACCAAAAACTCTTTGCATACTGGATTTTGTGATGTTACCAAAATCTTCTCCACAGTTATGTAACAGGAGATTTCTCAAAAGTCAGATTTCTTAGTTAGAGGACATTGTTCAAAAGGGGTATTGGACAATACTGATATATTAAACTCTAAATCACTATATTTTGTTGTGATGATTGAAATCACAGTTATATAATGCCTTTCTCGACATCAAGGCACGCATTACAATCACATTCCACACTCAACTAACCAACACACATCAGCACTTAACTACAAATGCAGACCtgaaagcagcagccaatcacataCAGCATACTCTTAACTGGAAATGACTGTCCACCTGGAGAACTGTATAAGAGACTTAGCCATTGACAGAGCCAGGACAGAGTGctaatccatatctgggcatacagtCATATATGCGAACACccatacaaatacacatatgCTCAAGTGTGTCcattttttctgggcaatttttGAACATCCAATTTATCTGATCATCTTGTTtctttttggactgtgggataAAAGCAGTTACTGGGGGAAATCTCCACAAACACGTGGAGATAATGCAAAGTCCTTCCACATCAACAGAGACTTGAACCCACTGGAAGAAGAACATTGTATCTACTAAACCACTGTACTGTTTTGCAATACAGTACTAATTttcaaatatacagtacagacttCTAATTTTTAACCTTTATTGTAATTAAGCAGTAAACTGTTGCTGCATTCAAGTGGTGAAGGAACTGGGAAATACCATTTGTACCACTTCACTGACTGTACAATTTATGGAGTGGATTTTGTGTATCGAGATGTGATGAATACCACAATCTTGTACCTTATCTGCATGTGTTCaaactaagcttttttttttttttaatcaaatgttcAGGTCATTACACTCAAACACTTATTTGTGTTAAGTGGGCTGATCTACTGACAAAGTGCCTGGACACAGTACACAGTAAAGTCATAATTACTTAGTAGTTAACCATCTGGGATGGACAAACCTCTGTTGAGCTCACAAAAGCAGCATATGTTcagaaaataaaaccaaaaactgtaaaatctgttttttttactgtttctcaGTAATATAGACAGTGTACTGCTGACCAGAGAACACAGATCAGACATCATCTTACTACATGAGAAATCCCCTTGACCTTCACTGTGGGAACTTTTCTGAatacagcagcagcttcagctcaACATAAACCTGCATCGTTCTTCACTCAGTAAGAAAGCAGGTTGGTAAGTTTAGCTGATGCTGTGTAGAGTTGGCATAAGCACTTGCAGCCATTGCCTCCAGCTCTGCCTCTTGCTTTCTAACCTACCCTGGAGTGGAACAAGAACAGAAAGAACTTCTTATACTTCTTGCAGCACTTTTAGACAAgccttcatttatttaaagaagtttattctttattttagacTGCAGCACCCTGCTATATCCACCAAAGTAAATGTTCAATACAAAttcaaaattatattttcttcttcttttattttttccttttaccgTTGACTTTAAATGAAAGGCTAAATGAGACATCGCATTTTACACCCATAAGAAAATGAGGCCTGAGTGAGGGCTTTTCCTAGGTGCGAATTTTAATACTAGATGACACCTCTGGCCTTAGTCATTTTCTTATGGGTGTAAAATGCGATGTCTCATTT

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105997 lncRNA upstream 157767 7389465 ~ 7389689 (+) True G78646
XR_455482.3 lncRNA upstream 201006 7343193 ~ 7346450 (+) True LOC103029755
TU105961 lncRNA upstream 201006 7343222 ~ 7346450 (+) False LOC103029755
TU105946 lncRNA upstream 226206 7319609 ~ 7321250 (+) True G78603
TU105945 lncRNA upstream 263592 7282651 ~ 7283864 (+) True G78602
XR_455479.2 lncRNA downstream 74629 7626997 ~ 7628892 (+) True LOC103026041
TU106108 lncRNA downstream 103961 7656329 ~ 7671771 (+) True fam167b
TU106109 lncRNA downstream 103961 7656329 ~ 7671771 (+) False fam167b
TU106114 lncRNA downstream 103961 7656329 ~ 7671771 (+) False fam167b
TU106116 lncRNA downstream 194653 7747021 ~ 7748434 (+) True G78725
XM_007257587.3 mRNA upstream 103735 7410429 ~ 7443721 (+) True rtn4ip1
XM_007257590.3 mRNA upstream 235164 7284848 ~ 7312292 (+) True rab3gap2
XM_007257592.3 mRNA upstream 235164 7284848 ~ 7312292 (+) False rab3gap2
XM_007257595.3 mRNA upstream 270353 7255113 ~ 7277103 (+) True LOC103030509
XM_022672650.1 mRNA upstream 302704 7226490 ~ 7244752 (+) True LOC111193178
XM_022672659.1 mRNA downstream 103939 7656307 ~ 7667801 (+) False fam167b
XM_022672660.1 mRNA downstream 130473 7682841 ~ 7744462 (+) True lck
XM_015607946.2 mRNA downstream 207481 7759849 ~ 7764677 (+) True LOC103024901
XM_022672468.1 mRNA downstream 214201 7766569 ~ 7799259 (+) True LOC103024072
XM_007257576.3 mRNA downstream 249852 7802220 ~ 7808950 (+) True ppie
TU105776 other upstream 686299 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 2019491 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 3249272 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 4127457 3419927 ~ 3419999 (+) True trnav-cac_1
trnav-aac_3 other upstream 4130545 3416839 ~ 3416911 (+) True trnav-aac_3
TU106040 other downstream 42339 7594707 ~ 7607664 (+) True G78671
TU106110 other downstream 103961 7656329 ~ 7670774 (+) False fam167b
TU106111 other downstream 103961 7656329 ~ 7729001 (+) False fam167b
TU106244 other downstream 983548 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 989760 8542128 ~ 8549968 (+) False G78817

Expression Profile