RNA id: TU106109


Basic Information

Item Value
RNA id TU106109
length 4215
lncRNA type sense_over
GC content 0.38
exon number 3
gene id fam167b
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7656307 ~ 7729001 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTAGAGAGCACAGCTCAGATGAGGGAGAACCGGAGGACCTGGACAGCGTGAAAGCGCTGACCGCCAAGCTGAAGCTGGAGACCCGCCGGCCGTCCTACGTGGAGTGGCGGGAGAGGCTGCGGAGCCGAGCGGCCGGGGAGGGGCGTGAGGAGCCGGCGGACGGAGCGAGCACTGTGTGCGGGTTCGACACGATAGACGAGGCGCTGGAATGGCTGAGGAGGGAGCTGAGGGAGATGCAGTTGCAGGATAACCGACTGGCCCGGCAGCTGATCCGCCTCCGCGGGGAGATCCACCAGCTAAAGGTGGAGCAGACTTGTCACCAGCACAAGGAGATGCTGGACGACGCCACGCTGGAGCTGGAGGAGTGCGGCGAGGAGTCCGACCTGCTCTGCGACATCCCGATGAAGGCCGCCTTTGCCCTGTCCACACCTCTCAAACAGATGGGCCTCACCAAGATGAACCTAAACGCCAGGCGCTTCTCCCTCTGCTAGAGAGGAAGGAAACCTGAGCTACAAGCACAAAGGATCAAGCCATGACACACGCCAGCAAGATGCCAAGTCTTAGATCAGGGACATTCACCGTAAACAGTCCTCGAAGGTCAAGGACTGATCTGCAGCTTTACAAACCTTCCCTTTCTTTATTCAGGCATCTGCTGTGGCAACAAAGCCCAATCAGCTGCATTGTTAACCTGTGGCTATCAGTTAATCAGGGCCTGATCCTTATCCAGGGTCTAGCTCCTGGAGATCCAGTGCCTTAGATACTGTGTACCACAGTGTGTGCTGACATATAGTAATAAGACATATTCCACGATATCTAACAcctaaaatcttattttttttgtgcaatacTGCCAAAACACTGCAATTTAAACAAATTGCAGATTCACCAAAGGTTAATTAGCTTTGTTGAGTCTCTTCTTCCCTTTTCTTTGGTTTCAATTCAAATCCATCTTGCCTTGTTTAATGTTAGTACAGCTGTTTATGGTGTTTTCATTCTGACCACCTTTACAGCTCAGGTTAAACATCTCAGTAGTGTACTTTTGCACTCAATCTAAACCAACCTAGGATCTCCTACTTGGGCAAATCCAAACCAGACcttgaagtggtctctcaaaAGTTACTTTCAAGCCTAAAAAATGGCATTTAGGTGGCACAAAGGTTAGAAGTTAGAATCTCAGATTACGCTgcctgccatcagcagccagagtcagagagagcacaattggcccagCTCTCTCTCAGGGTGGTAAATGGCACTCTAATGTGATGTTGGTATCTTGTATTAGAGCTGGGGATCCGTCACTTTCCTCCATGTGTGCTAGCTGCCTAcccactaagaaaaataagtacagatttgtgcttaagagtacaaagcttgttgctggggctgtaccttatattgaggtacaaaaaagtacccttcagtgaaagtccttttttgtacccatgtttttgtgccagtaaagattataaaaattataaacattatcatcaactgaatatggctcaaaaacttgatgatcgaaaattgtctggctttcaaataaaaaatgtgcaattaaaatatatattgtttgttagTACAGTgctacagaatactgaatgtaccttttggctggttaaatggtacaaatttgtacttatttctgttagaaattactttgtacttcagagggaacaaatctgaccctgtaaagaccaatattatacctttgagggtacaattatgaagagtaatgtacctttgagtacaaaatagtactcatatcgtacctctgttttttagagtgtggggATGCTGCATTGGTGGCAGTTAGAAAAGAGTGTGTTAAATGGCTAtgcctaaatgtttattttatgttgtcttttttattaatacagtatCATGTGTATTAATTGCAGGGGGGCCTTAGAtgcttacattttaaatttctgCCTCTTCTGCTCTTTCGTATGGTTCCCTCTGTACTAAAGCTTGTAATATAGTAGTGCTATTATAtggatattatataatattatgcaTGTTGTCACCATCACCAGAAGGCCTTATACAAATACAGTTAGATTTACTTTTATAGTAATTATCTGACGTTTCTATTCAGAGAGATTcaaggtgttttcacacctaaaaaAATCCGGACCAAAgccatgtgtttgttacattgtttatATTTAGTCCGATTAGTTCTGGTTTCACACTGAAGTTTAGTGACTGAGTTTAGCACTAAAAATGTTTCGCTGTGTCCTGTCATCATTACCTTACATGGATGGAGTCTCCCTGTAGTTCTGATTGTTTGGTATCATGATTGGTTGGCAGGTGCATTACAAAGAAGAATCAGTGTAACAGATTCCCCACAGTTTGCTTGTGTTTCTGTTCATGGGCCACTCCAACAAAACGGTGACCAGGAAGTTACATACATAAATGTGCGCagaaaattactgtaaaatacattttattattaagcatattgTCTTGTTTATTGACCTAAATGAAAAAGTAAGATGTgtaattgaagaaaaaaatataaaaactactTGAAACACTGAAAAATGGCATTTGTctccactctctaactataaactttaccataaaatataattattaaaatccttcagatatgtatttttatttgcattgttgtgtgactccaaatcccatctatgcttattttataaaaatatttttgtcataacaaatacataatatttaagttaaaatacacattgtatgttgtgtccctgggtttcgcTCAGTCCAgttactgtaaaacattaccctgatcatctgaaacatctggaatattcCACAACAAGTCACATCtgcaacaggaagtgacatcagctggttcttttgaagatcatgggaagaccaaaattaaggtcaatcatttgtttttctgtatatttgacacttactcctgttacctaaattaattcttagatggtattggtttattttgaaaataaacattttgggaaaatcactcgAATGTGCCCAGTGTCTTCATGTTATTAGCATTGCCACCATtttgctatttttcatgtttttgctaattctaggCTAAAAACTAATTCCTGTTAGTTTAATTCAtgttacttaaaacataaaaagtaacaggaataagtgcctgtaacaggagtgagttccagtgcCATTAACatgagtaatttttttttgtcgtaaataaaataaataaagtaacatttttcatgaaagaaaataaaaataattagtgGACTTGGTTGTAAACATGCGTTTTAAATGTCACGAGTTTTGTAACCACCTTCGTCTAAGAAACCTAAAGCTGCCAGAAGTTGACCAGTACatattttgaatagttaaatacatatattgttagattcagagtttaaaaaatataaaaatgaagttTCCAACAAGCGAATGGcacccatttggtggaatggcccttaaaaataagggttaatctacaagAATCACCAGCATAATCTGTTTTACCCATATTGTTATGAGAGGCACAAACACGTGATGGGGAGTctttttggcacaacacctattgctattttttcttctgttgtttaatagGTGATGATAGCCTGTCTCAACTTCATGTAATTGCATCATCACTTTTGACACCTGTCCAGACTAAAGGTTGTAGGTGTAAAATAGGTAAGCAATATggaaatattttatcatatgaTCAATTTTCTTATCATATCAACCATATTCTTTTGTAAGCATATCCATGATATTCTCAttttttaaggaACAGTTacccaactgtacatttaattcCAAAAGAGTATAAAAACAGTTTAACTTATAATGTGCAGTAAAAAATGAATGATATTCACTGTGTTGTACATGAGAGagtatttgaattattattattattatttttttaagattttgtcACCAATGAAGCCTTTTGTCTGCATGTCAAAACATTGTGATGAATATCATGAAATGtgaatgtctttaaatattgcgatattatatttttaccagATCACCCACCTCTAGTATGAAATCAGCCTTGTGTGTGAATCTTGTTACACTGGATGGAGAATGCAGTGCTAGAGGCAGAATCTTGCCTACGATCTCTTCACAGCTGATTGACTACAGCCTAAAAATGCCTAAAAGCAAAAGTAAATGAATGCAAATCAGATTGACTTTTTAtactattcatttatttactttgttttacAATGTAGtaagaataaaaacatatgCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_455479.2 lncRNA upstream 27437 7626997 ~ 7628892 (+) True LOC103026041
TU106026 lncRNA upstream 103961 7547456 ~ 7552368 (+) True G78668
TU105997 lncRNA upstream 266640 7389465 ~ 7389689 (+) True G78646
XR_455482.3 lncRNA upstream 309879 7343193 ~ 7346450 (+) True LOC103029755
TU106116 lncRNA downstream 75250 7747021 ~ 7748434 (+) True G78725
TU106120 lncRNA downstream 79643 7751414 ~ 7758200 (+) True G78728
TU106161 lncRNA downstream 312810 7984581 ~ 7986723 (+) True G78753
TU106168 lncRNA downstream 322856 7994627 ~ 7996807 (+) True G78760
TU106195 lncRNA downstream 611169 8282940 ~ 8332434 (+) True G78786
XM_007257587.3 mRNA upstream 212608 7410429 ~ 7443721 (+) True rtn4ip1
XM_007257590.3 mRNA upstream 344037 7284848 ~ 7312292 (+) True rab3gap2
XM_007257592.3 mRNA upstream 344037 7284848 ~ 7312292 (+) False rab3gap2
XM_007257595.3 mRNA upstream 379226 7255113 ~ 7277103 (+) True LOC103030509
XM_022672650.1 mRNA upstream 411577 7226490 ~ 7244752 (+) True LOC111193178
XM_022672660.1 mRNA downstream 11070 7682841 ~ 7744462 (+) True lck
XM_015607946.2 mRNA downstream 88078 7759849 ~ 7764677 (+) True LOC103024901
XM_022672468.1 mRNA downstream 94798 7766569 ~ 7799259 (+) True LOC103024072
XM_007257576.3 mRNA downstream 130449 7802220 ~ 7808950 (+) True ppie
XM_022672664.1 mRNA downstream 743436 8415207 ~ 8442555 (+) False erich1
TU106040 other upstream 48665 7594707 ~ 7607664 (+) True G78671
TU105776 other upstream 795172 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 2128364 5452115 ~ 5527965 (+) False LOC103025550
TU105324 other upstream 3358145 4289507 ~ 4298184 (+) True G78111
trnav-cac_1 other upstream 4236330 3419927 ~ 3419999 (+) True trnav-cac_1
TU106244 other downstream 864145 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 870357 8542128 ~ 8549968 (+) False G78817
TU106236 other downstream 871414 8543185 ~ 8549968 (+) False G78817
XR_002650310.1 other downstream 1823678 9495449 ~ 9554528 (+) False spata17
TU107028 other downstream 3135600 10807371 ~ 10813470 (+) False fam98a

Expression Profile