RNA id: TU106116


Basic Information

Item Value
RNA id TU106116
length 1287
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G78725
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7747021 ~ 7748434 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gccaatgccaatgagtttgagttagaaaaaatatttttttagtatcatttaatgaaaaatgaaaacgggtcccacagacccgaacaccacacaagggttaagtactaaaatgctgtatctgtatataCAGGAGTATTATTTgctcctacttccacttttatattactgtatattttgaaTGAGTTCAAAATTTTTACtccaatacatttttatgtgctgcattgtaacaaagctttttaaacaaaaaatgttgggtACTTTAGTTCTTCCACTTAaatgtggagcttaaagaacagttaaacttttactcaagtctctTTAAatagagcacttgtacttttagTCAAGTTTACATCTATAGTACTGTAtacatgtatttgtatgtatgtatgcatataTTTAACAGTTGGTTTGACATCACAAAGTCACATTTtgttaaacagttaaacagatataataatattaatattaaattaatattagatATATTAGTTGCTAATTTTCCAATGGTGCATTAAATGTTGCATGGCAATGGAAAttataagaatataaatattgtaaaataaatgttaagtaAAGATGTTGGtcatagttttttgttttaccatTTGAAGTGGCCtgtgagtgaaagtacaaggctggtgtttctaataatatggccagtgagtgagtaTATTAGCCCACTTGAAAAGTTTCTCAGAACAATGAAACTGTTCAATACAGTTAGAGAACTGGGAACCAAGGGCACCATGCTGCTGGCGCTCACTTTGCGACTTGTCCACATATATAAAAACTGGTCCCAGAGGGGCGTGGCACTTGGTGTGTGCAGTGTCCACCTGTGGCTCAGGTGAGCAGGACCTCTGGCTCACAGCCAATCACTGGTCTCTTCGGTAGGTGAGGTGGCATCTAGAAGGTCGTTTTCCTCCGTTGGTTCCTCCTCTTCTGGGCAGTTGATGGAAGACTCTGGTACAGGTGAGGATGGTACGGACTCCTCCGGGAAATGGACACGCCCCTTCCCTTTTGGCATTAACCGGTCTCTTCCTCCAGGGGCAGGGCAGACGCAGGAACGCGGTGCAGGCCACGAAGCAACGTCCAGAGAACACCACCTCCACCATGGACATCAGGACCAGCAGCACCCACAGGATCAGAGTAGTCCCCTGCAGGAAGAGTGGGGAAAACACACTCCAATCAAGGGCTGTACCAAATACCTTAAAAATGGTGGTTTTCCATTATATTAAAAGGTGTTGTATGTAGATGAATCCTAAAGTCATTATAAGCATAAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106108 lncRNA upstream 75250 7656329 ~ 7671771 (+) True fam167b
TU106109 lncRNA upstream 75250 7656329 ~ 7671771 (+) False fam167b
TU106114 lncRNA upstream 75250 7656329 ~ 7671771 (+) False fam167b
XR_455479.2 lncRNA upstream 118129 7626997 ~ 7628892 (+) True LOC103026041
TU106026 lncRNA upstream 194653 7547456 ~ 7552368 (+) True G78668
TU106120 lncRNA downstream 2980 7751414 ~ 7758200 (+) True G78728
TU106161 lncRNA downstream 236147 7984581 ~ 7986723 (+) True G78753
TU106168 lncRNA downstream 246193 7994627 ~ 7996807 (+) True G78760
TU106195 lncRNA downstream 534506 8282940 ~ 8332434 (+) True G78786
TU106201 lncRNA downstream 607650 8356084 ~ 8356486 (+) True G78792
XM_022672660.1 mRNA upstream 2559 7682841 ~ 7744462 (+) True lck
XM_022672659.1 mRNA upstream 79220 7656307 ~ 7667801 (+) False fam167b
XM_007257587.3 mRNA upstream 303300 7410429 ~ 7443721 (+) True rtn4ip1
XM_007257590.3 mRNA upstream 434729 7284848 ~ 7312292 (+) True rab3gap2
XM_007257592.3 mRNA upstream 434729 7284848 ~ 7312292 (+) False rab3gap2
XM_015607946.2 mRNA downstream 11415 7759849 ~ 7764677 (+) True LOC103024901
XM_022672468.1 mRNA downstream 18135 7766569 ~ 7799259 (+) True LOC103024072
XM_007257576.3 mRNA downstream 53786 7802220 ~ 7808950 (+) True ppie
XM_022672664.1 mRNA downstream 666773 8415207 ~ 8442555 (+) False erich1
XM_007257570.2 mRNA downstream 666804 8415238 ~ 8442555 (+) True erich1
TU106111 other upstream 18020 7656329 ~ 7729001 (+) False fam167b
TU106110 other upstream 76247 7656329 ~ 7670774 (+) False fam167b
TU106040 other upstream 139357 7594707 ~ 7607664 (+) True G78671
TU105776 other upstream 885864 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 2219056 5452115 ~ 5527965 (+) False LOC103025550
TU106244 other downstream 787482 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 793694 8542128 ~ 8549968 (+) False G78817
TU106236 other downstream 794751 8543185 ~ 8549968 (+) False G78817
XR_002650310.1 other downstream 1747015 9495449 ~ 9554528 (+) False spata17
TU107028 other downstream 3058937 10807371 ~ 10813470 (+) False fam98a

Expression Profile