RNA id: TU106161


Basic Information

Item Value
RNA id TU106161
length 1782
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G78753
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 7984581 ~ 7986723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agttatgtaagaactaaaaatcGCAATCAACAATCACtcatatacagctcaggaaaaaatacgagaccacttaaaaatgatgagattttttgatttttaccaaattgaaaacctctggaaccaagagaaagatggataatcacaagccatcaaaccaagctgagcttCTTAAATGTGTGCACCACACATACTTCatactttttgaatatgaagttgttctctttgcattatttgaggtctaaaagctctgcttttcttttttgtaatttcagccatttctcattttcggcaaataattgctctaaattacaatatttttatttggaatttgggagtctgtggtttatagaataaaactaaaagttatgtaagaactaaaaatcGCAATCAACAATCACtcatatacagctcaggaaaaaatacgagaccacttaaaaatgatgagattttttgatttttaccaaattgaaaacctctggaaccaagagaaagatggataatcacaagccatcaaaccaagctgagcttCTTAAATGTGTGCACCACACATACTTCatactttttgaatatgaagttgttctctttgcattatttgaggtctaaaagctctgcttttcttttttgtaatttcagccatttctcattttcggcaaataattgctctaaattacaatatttttatttggaatttgggagtctgtggtttatagaataaaactaaaaatgttaaGGAAACTATAGCGTGCgcatcactttaaatggtgctgtcagtttacaaataaataaaactaaaagttatgtaagaactaaaaatcGCAATCAACAATCACtcatatacagctcaggaaaaaatacgagaccacttaaaaatgatgagattttttgatttttaccaaattgaaaacctctggaaccaagagaaagatggataatcacaagccatcaaaccaagctgagcttCTTAAATGTGTGCACCACACATACTTCatactttttgaatatgaagttgttctctttgcattatttgaggtctaaaagctctgcttttcttttttgtaatttcagccatttctcattttcggcaaataattgctctaaattacaatatttttatttggaatttgggagtctgtggtttatagaataaaactaaaaatgttaattttactcaaacatacagctataaatagtaaaatcagagaaactgattcagaaagagaagtggtctcttaattttttccagagctatattgGAAGAACAACCCTACAATATACTGTGATAAATTGAATCGTAATCCCTGTATTGTCCTTACCAATACAGAGCCCCATTCATACGTCACCAATCAACCAAGAGAAGCTGTGTTGGTCTTAAACAAAACAGTTCTTCAAACAACAAAAGGTCCTTGACTACATTTAGCATCAGTAAAGAAGGCTGTGGAAATTCGATTTCTAACCAAACTATTCCTTCAAATCTGCTTTGTCAGTTAAGCACAATACTAAAATAGGTAGTAGCTAAAATCttgccaaaaaacaaaaatagatcCTTCTGCTTCAAATATCAAGTACCAACATCAAAAATGTAGCTCCATACCAAAAACATTGCTTAAGCTTCATACTGTTCCACAACTCTACACTCCAACCAATGAGGTACATCTGTACTTTCACCTAACCCCCTTTCACCATCAGCTGGAGTGCGCTTTCTCCTCTCTGGGCCCGTTCTCTGAGGTCGGCTTGTTGGCAAAATTCCAGTCCACGGGGTTGAGCAGCTGCATGGTCTTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106120 lncRNA upstream 226381 7751414 ~ 7758200 (+) True G78728
TU106116 lncRNA upstream 236147 7747021 ~ 7748434 (+) True G78725
TU106108 lncRNA upstream 312810 7656329 ~ 7671771 (+) True fam167b
TU106109 lncRNA upstream 312810 7656329 ~ 7671771 (+) False fam167b
TU106114 lncRNA upstream 312810 7656329 ~ 7671771 (+) False fam167b
TU106168 lncRNA downstream 7904 7994627 ~ 7996807 (+) True G78760
TU106195 lncRNA downstream 296217 8282940 ~ 8332434 (+) True G78786
TU106201 lncRNA downstream 369361 8356084 ~ 8356486 (+) True G78792
TU106204 lncRNA downstream 369404 8356127 ~ 8356486 (+) False G78792
TU106207 lncRNA downstream 420437 8407160 ~ 8407552 (+) True G78794
XM_007257576.3 mRNA upstream 175631 7802220 ~ 7808950 (+) True ppie
XM_022672468.1 mRNA upstream 185322 7766569 ~ 7799259 (+) True LOC103024072
XM_015607946.2 mRNA upstream 219904 7759849 ~ 7764677 (+) True LOC103024901
XM_022672660.1 mRNA upstream 240119 7682841 ~ 7744462 (+) True lck
XM_022672659.1 mRNA upstream 316780 7656307 ~ 7667801 (+) False fam167b
XM_022672664.1 mRNA downstream 428484 8415207 ~ 8442555 (+) False erich1
XM_007257570.2 mRNA downstream 428515 8415238 ~ 8442555 (+) True erich1
XM_007257571.2 mRNA downstream 428515 8415238 ~ 8442555 (+) False erich1
XM_007257597.3 mRNA downstream 482878 8469601 ~ 8507161 (+) True LOC103031442
XM_022672670.1 mRNA downstream 565725 8552448 ~ 8566788 (+) False hmgcl
TU106111 other upstream 255580 7656329 ~ 7729001 (+) False fam167b
TU106110 other upstream 313807 7656329 ~ 7670774 (+) False fam167b
TU106040 other upstream 376917 7594707 ~ 7607664 (+) True G78671
TU105776 other upstream 1123424 6857409 ~ 6861157 (+) False LOC103024862
TU105595 other upstream 2456616 5452115 ~ 5527965 (+) False LOC103025550
TU106244 other downstream 549193 8535916 ~ 8537682 (+) True G78818
TU106242 other downstream 555405 8542128 ~ 8549968 (+) False G78817
TU106236 other downstream 556462 8543185 ~ 8549968 (+) False G78817
XR_002650310.1 other downstream 1508726 9495449 ~ 9554528 (+) False spata17
TU107028 other downstream 2820648 10807371 ~ 10813470 (+) False fam98a

Expression Profile