RNA id: TU106236


Basic Information

Item Value
RNA id TU106236
length 795
RNA type TUCP
GC content 0.44
exon number 3
gene id G78817
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 8529854 ~ 8549968 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcgcatttctagcgcagaaaaacaggccaaagagtctaaaagttgccgtaattaaggagtttaatattaagagacatcatttgttttattacagagtctgtggcccgtgacttcaaatatatttctccttctggcccccaagaaagaaagtttggacacccctgctgtacagTAAGCTTGTATTCCTGTATTTtcttaaaagaaacaaaacgcTCCAATAATTGACAAAATATAACTTTTTGCACTGTAAAACTATGAAACCTAATTTCAGACACATGTCAGTTCTGGCTGATCATCTACATTTGGGGTTAATTGGattttttcataaaattatCCCTTTAAAGTAAACCTGAGCTGAattgaactgaaataaactgaTATCTACAGAATGAGGACAGTGTACATGTTGTGACCTTTTTAAAGATCTTCTCGAGTCCGGGTTTGTCCAGCAGGTCCAATTCATGGAACTCAATCTTGGTGTCCAGAAATTTCTCTATCCTCTTCAGGCTCTCAGGGACATCTCCTTCTCGGACAGCATTGCTGAAGTTATCGATGACCACAGGCTGATAACCGGCCTCAATCAGCTCCACCACACAGTGACTGCCTATGTAGCCCCCTCCACCCGTCACCAGCACCTTCTGCACCATCCTGGCAGCctAGAACTTCAGAGAGGAGGATCCGGACAGGGAGAAGCCGGGCTGATctgtgaggaggaggagagagagaggaagagctgAGCTCCTGAATCACTTTATTCattctctcttcctcctctcacAGAGACGTGGAGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106237 lncRNA upstream 145 8541537 ~ 8543040 (+) False G78817
TU106238 lncRNA upstream 1324 8529854 ~ 8541861 (+) True G78817
XR_002650308.1 lncRNA upstream 4804 8536432 ~ 8538381 (+) True LOC111193184
TU106225 lncRNA upstream 30538 8512397 ~ 8512647 (+) True G78810
TU106221 lncRNA upstream 32361 8476510 ~ 8510824 (+) True G78806
TU106252 lncRNA downstream 42777 8592745 ~ 8593288 (+) True G78824
TU106263 lncRNA downstream 99827 8649795 ~ 8672419 (+) True G78834
TU106538 lncRNA downstream 742590 9292558 ~ 9293030 (+) True G79035
TU106544 lncRNA downstream 823688 9373656 ~ 9373883 (+) True G79041
TU106546 lncRNA downstream 824116 9374084 ~ 9375551 (+) True G79042
XM_007257597.3 mRNA upstream 36024 8469601 ~ 8507161 (+) True LOC103031442
XM_022672664.1 mRNA upstream 100630 8415207 ~ 8442555 (+) False erich1
XM_007257570.2 mRNA upstream 100630 8415238 ~ 8442555 (+) True erich1
XM_007257571.2 mRNA upstream 100630 8415238 ~ 8442555 (+) False erich1
XM_007257576.3 mRNA upstream 734235 7802220 ~ 7808950 (+) True ppie
XM_022672670.1 mRNA downstream 2480 8552448 ~ 8566788 (+) False hmgcl
XM_007257567.3 mRNA downstream 2480 8552448 ~ 8563360 (+) True hmgcl
XM_007257562.3 mRNA downstream 73433 8623401 ~ 8634193 (+) True trmt61b
XM_007237296.3 mRNA downstream 945481 9495449 ~ 9554725 (+) True spata17
XM_015603511.2 mRNA downstream 1216198 9766166 ~ 9819445 (+) True greb1
TU106244 other upstream 5503 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 814184 7656329 ~ 7729001 (+) False fam167b
TU106110 other upstream 872411 7656329 ~ 7670774 (+) False fam167b
TU106040 other upstream 935521 7594707 ~ 7607664 (+) True G78671
TU105776 other upstream 1682028 6857409 ~ 6861157 (+) False LOC103024862
XR_002650310.1 other downstream 945481 9495449 ~ 9554528 (+) False spata17
TU107028 other downstream 2257403 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 3004714 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 3351127 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 3514876 12064844 ~ 12076211 (+) True G79761

Expression Profile