RNA id: TU106604


Basic Information

Item Value
RNA id TU106604
length 621
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G79097
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9713212 ~ 9716264 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATTAGTGTGTATTGTtctggtacgagtggatcagacactgcagtgctgctggagttcttaaacactgtcCACTCTAGGAGCAGCACACTCAGAAGGACTAtatttctccacctcctccttcGTATATGTTTAGTAGAGCTGAAAAAATGGGCAGGGAATGTATCTAATGTTCATGTTAATCACACGTTAACATTAATCATACTTCCAGCTGGTTCAATTCACAGATTAAGCTCTTTTCTATGCTGACAATAAAATCATGATAAAACATCAGTAGAAACATAGTTTATTCCATAACCAGGCTTAATCAATATGAAGTTGTGTGTTGATAAAAGGCACAGCATTATAATACAACAGGCTGGATGAAGATAAGGTCTGTGTGTAGTGAAACGgctattctgattggctgcgcAGCTGAGCGCTCAGGTCTTGGAGCTCTGTGATAAGTCGTTCCAGTTCTGTCACATCATCTCTAAGGTCTTCAGGAAGATTTCCAGTAGAGACGTCAGTGTAGAGTTGTTTGATTTGGTGGCCAGACTCTTCAGACTGAGCCGCGCTGAGGACAACATCTGCAAGGCCTCCTGAGGATTAGTCTTCTCTCTGCTACAGCTGATagagactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106590 lncRNA upstream 25491 9687495 ~ 9687721 (+) True G79084
TU106569 lncRNA upstream 101448 9610735 ~ 9611764 (+) True G79065
TU106565 lncRNA upstream 153943 9559053 ~ 9559269 (+) True G79061
TU106546 lncRNA upstream 337661 9374084 ~ 9375551 (+) True G79042
TU106544 lncRNA upstream 339329 9373656 ~ 9373883 (+) True G79041
TU106639 lncRNA downstream 107805 9824069 ~ 9831085 (+) True G79115
TU106646 lncRNA downstream 149928 9866192 ~ 9868258 (+) True LOC111193137
XR_002650280.1 lncRNA downstream 149939 9866203 ~ 9868253 (+) False LOC111193137
TU106647 lncRNA downstream 154336 9870600 ~ 9872719 (+) True G79123
TU106649 lncRNA downstream 154336 9870600 ~ 9872082 (+) False G79123
XM_007237296.3 mRNA upstream 158487 9495449 ~ 9554725 (+) True spata17
XM_007257562.3 mRNA upstream 1079019 8623401 ~ 8634193 (+) True trmt61b
XM_022672670.1 mRNA upstream 1146424 8552448 ~ 8566788 (+) False hmgcl
XM_007257567.3 mRNA upstream 1149852 8552448 ~ 8563360 (+) True hmgcl
XM_007257597.3 mRNA upstream 1206051 8469601 ~ 8507161 (+) True LOC103031442
XM_015603511.2 mRNA downstream 49902 9766166 ~ 9819445 (+) True greb1
XM_007240769.3 mRNA downstream 49902 9766166 ~ 9819445 (+) False greb1
XM_015603512.2 mRNA downstream 49902 9766166 ~ 9819445 (+) False greb1
XM_022672681.1 mRNA downstream 66419 9782683 ~ 9819445 (+) False greb1
XM_007240767.3 mRNA downstream 166742 9883006 ~ 9940006 (+) True LOC103029457
XR_002650310.1 other upstream 158684 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1163244 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1163244 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1175530 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 1984211 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 1091107 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1838418 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 2184831 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 2348580 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 4209605 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile