RNA id: TU106632


Basic Information

Item Value
RNA id TU106632
length 2002
lncRNA type sense_over
GC content 0.31
exon number 2
gene id LOC103029457
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9883006 ~ 9955038 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATTTGCTGGAACTTGCTGAGTCTTTTCtgtagaggatttttttttttttttcatttttgcttagaaaataaacaggattttttttattgtaattttaaccACAGTTAACTATTTACTATTGGCACACTGTTAGATCCGACGTCCAAGCTGTGACAAaactaaaagataaaatattttagacaACCAATATGTATTGCTTTTAATTAACATAAATGcaaggataaaaaaaatggaaatttaaGAAAAATTGAAATTTTGAAGAATTCAGTATGTGTGAATTCAGAACTGTGAGGTGAATAAGTGAATGAGTTATAATTGTTAAGtggtaaatgtaatgtatttattgcactGAATCTAGAACATGGGTTTGGTATATGATTATGCAGCATTGTGAAAATCCAGAAACCACCTTTATTTACTGAATTTCCAGTTAATCCATTCTTCCATTCTTTGTAGAAGACTGTAGCAGTTCTGGCAGCACAGGTGCTCTGAACCCACACAAGGAGGCATCTTGTGGATTTCTTCTTTAGTACTCTACAGGAAAAGAATCTGATTCCTGTGCATATGGCTCTACTACAAAATGTtcaaaagaaactagaaaaaagtaaaatggtAGTGCTAGTGGATCTAAATAATGTGCTCAGACACTGCAGCTCGAAAATCTGCACTGCAcgtctgaaaataaagaaaagtatgaAAGATAGCAGAGATAGCAGAGCTAAGCAGAGAAACATCTGAACGGCACAGAAGCAGAAAGCAGAGCTCTTAGGAACTTAGAACACATCTTTTTCCAGAGCCTGGGAATCTGTCACCTGAAGCTTCTGTCCAGtttgtaattaataattaaatgtctTAATTACAGACAACAATAAAGACATACATTAATGTATATGCACTGAATTAGTTGAATATATGTCTGCAGAGATTCTGCTTTCTAACATTAAAAAAgggaataaaatgtttttagttgttAAGTTAGTGATAAAAAGTATATTGATTTTATCATATTGATATAGAAAACCACTAAAACCATTTCACTGTGAAAGACTGATGAAAGTGTAGATGATGCTTTTTCTTAACTCTTTACTGAAGGGCAGAGATTAGAAATGATTACTTGCTTATTTACTGCCTACATAAAcctttatgattatgattatatatttatgacTGTTATGCTTAATCATCACAGGATGATTAAGCATACCCTTCTGGGGTAAACTGACACAGCTGAGTGTAAATATATGATAATGAGTTGAGtgaatgtttatttatgtttgagtgacTAAGTGTTGATGAATGTAATAAGTGTTAATGAGCAAGTGTTGATGAGTGTTAATAAGTGTTTAAGTAATTAAGTgttaatgagtgagtgagtaatgtAGTGTCAATGAGTGTTAATGAATTTTTATGGGTGTTAATGGATGTTGAGTTACTGAGTGTTTAAGCAATTAAGTGTTGATTTTTAATGGATGTTAATGAGTGTTTATGGGTGCTAATGAATGTTTAGATAATTGAGTGTCGATGAATGTTAATGAGTGTTAGAGGGTTTAAGTGTTTGAGTGAGTAATTGAGTATTTGAGCGTTTATGGGTGTTAATTGATGTTTGAGTAATTGAGTGTTGATGAGTGTTTAAGAGTATTTgagtattttattcatattaaccAGTACTGGGTTTATCTTAAGCGTTAAATTCAGTTAATTCAAGATATAATTTCACCGTACTGTTTCTCATTTCACCCACACTGTGTTTGTGACTTGTGTTTATAACCTTTCTGCTTGTCTTTAACTTTTGGTGAAATTCTGATATTCTTTCTGTGAAAGATCTCATTGCCTAAGTTGTGGATGTTTCAGGTTAGTTTGATaagatgtaataaaaaaaatgtaaaaaaaaaaaaaaaaataataatcttgcTCTAATATTTATCTAAATTGGTGCATATCTCATTTCTCAAAATTACTCTGAATTACTGTTTATATCAGAGAAACAAATGACTGAATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106647 lncRNA upstream 66398 9870600 ~ 9872719 (+) True G79123
TU106649 lncRNA upstream 67035 9870600 ~ 9872082 (+) False G79123
TU106646 lncRNA upstream 70859 9866192 ~ 9868258 (+) True LOC111193137
XR_002650280.1 lncRNA upstream 70864 9866203 ~ 9868253 (+) False LOC111193137
TU106639 lncRNA upstream 108032 9824069 ~ 9831085 (+) True G79115
TU106668 lncRNA downstream 1852 9956890 ~ 9958311 (+) True G79141
TU106695 lncRNA downstream 99683 10054721 ~ 10056138 (+) True G79166
TU106694 lncRNA downstream 101429 10056467 ~ 10058746 (+) True G79165
TU106706 lncRNA downstream 152592 10107630 ~ 10113283 (+) False G79174
TU106705 lncRNA downstream 155738 10110776 ~ 10113321 (+) True G79174
XM_015603511.2 mRNA upstream 119672 9766166 ~ 9819445 (+) True greb1
XM_007240769.3 mRNA upstream 119672 9766166 ~ 9819445 (+) False greb1
XM_015603512.2 mRNA upstream 119672 9766166 ~ 9819445 (+) False greb1
XM_022672681.1 mRNA upstream 119672 9782683 ~ 9819445 (+) False greb1
XM_007237296.3 mRNA upstream 384392 9495449 ~ 9554725 (+) True spata17
XM_007239248.3 mRNA downstream 287550 10242588 ~ 10252495 (+) True LOC103026171
XM_007239249.2 mRNA downstream 327627 10282665 ~ 10292293 (+) True LOC103026492
XM_007239250.3 mRNA downstream 373930 10328968 ~ 10336716 (+) True LOC103026974
XM_015603051.2 mRNA downstream 397376 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA downstream 397376 10352414 ~ 10361816 (+) False LOC103027561
XR_002650310.1 other upstream 384589 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1389149 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1389149 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1401435 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2210116 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 852333 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1599644 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1946057 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 2109806 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3970831 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile