RNA id: XR_002650280.1


Basic Information

Item Value
RNA id XR_002650280.1
length 476
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC111193137
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9866192 ~ 9868258 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTCCCAGAAAACGCACCATCAAATTCCTGAAACTagcaacagaaaaataaataaggtggcttgaaaataaaaaaagtgctgaaaaataaaaaagagtgcaaactaaatgctaaagctaacacGCACAGGATTATGGGATCGTGAGTTCGGAAACCCACAGGAAACATGTCCAGCGGGAGAAATCACTGTTATTGGGATTTTACTGCTCGTAATGTcctctttgtttgtgtgtttggagcACCAGCTTACAAGGAAGACTTTTACTCCCATCTCTCAAAAACTCATCCCTCTGTACTATCCATCCATAGTCCAGAGCCTACAGGTGATGCTGCTGATTGGCTAGACTGATGCAGGGGGATGACTCTTTCTCGTTCCACGCTCCCTGGCCAGCCAGTCAGAGAAATGGAGACGTTTGGCATATTTGCTGTTAATTAGTTGctcttttataatgtttatctttatattatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106639 lncRNA upstream 35118 9824069 ~ 9831085 (+) True G79115
TU106604 lncRNA upstream 149939 9713212 ~ 9716264 (+) True G79097
TU106590 lncRNA upstream 178482 9687495 ~ 9687721 (+) True G79084
TU106569 lncRNA upstream 254439 9610735 ~ 9611764 (+) True G79065
TU106565 lncRNA upstream 306934 9559053 ~ 9559269 (+) True G79061
TU106647 lncRNA downstream 2347 9870600 ~ 9872719 (+) True G79123
TU106649 lncRNA downstream 2347 9870600 ~ 9872082 (+) False G79123
TU106632 lncRNA downstream 70864 9939117 ~ 9955038 (+) False LOC103029457
TU106666 lncRNA downstream 81336 9949589 ~ 9955787 (+) True G79139
TU106668 lncRNA downstream 88637 9956890 ~ 9958311 (+) True G79141
XM_015603511.2 mRNA upstream 46758 9766166 ~ 9819445 (+) True greb1
XM_007240769.3 mRNA upstream 46758 9766166 ~ 9819445 (+) False greb1
XM_015603512.2 mRNA upstream 46758 9766166 ~ 9819445 (+) False greb1
XM_022672681.1 mRNA upstream 46758 9782683 ~ 9819445 (+) False greb1
XM_007237296.3 mRNA upstream 311478 9495449 ~ 9554725 (+) True spata17
XM_007240767.3 mRNA downstream 14753 9883006 ~ 9940006 (+) True LOC103029457
XM_007239248.3 mRNA downstream 374335 10242588 ~ 10252495 (+) True LOC103026171
XM_007239249.2 mRNA downstream 414412 10282665 ~ 10292293 (+) True LOC103026492
XM_007239250.3 mRNA downstream 460715 10328968 ~ 10336716 (+) True LOC103026974
XM_015603051.2 mRNA downstream 484161 10352414 ~ 10362045 (+) True LOC103027561
XR_002650310.1 other upstream 311675 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1316235 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1316235 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1328521 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2137202 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 939118 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1686429 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 2032842 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 2196591 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 4057616 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile