RNA id: TU106649


Basic Information

Item Value
RNA id TU106649
length 380
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G79123
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9870600 ~ 9872719 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACCTCtcttacatttaataaacactaatactgtactctgactgtaatctaacacccctcactgcctccacctctcttacagttaataaacactaatactgtactctgactgtaatctaacacccctcactgcctccacctctcttacatttaataaacactaatactgtactctgactgtaatctaacacccctcactgcctccacCTCTCTTAcaattaataaacactaatactgTACTCTGACTGTAATCTAACACTCCTCACTGCCTCCCTCCACCTCtcttacatttaataaacactaatactgtactctgactgtaatctaacacccctcactgcctccacctctcttacagttaataaacactaatactgTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106646 lncRNA upstream 2342 9866192 ~ 9868258 (+) True LOC111193137
XR_002650280.1 lncRNA upstream 2347 9866203 ~ 9868253 (+) False LOC111193137
TU106639 lncRNA upstream 39515 9824069 ~ 9831085 (+) True G79115
TU106604 lncRNA upstream 154336 9713212 ~ 9716264 (+) True G79097
TU106590 lncRNA upstream 182879 9687495 ~ 9687721 (+) True G79084
TU106632 lncRNA downstream 67035 9939117 ~ 9955038 (+) False LOC103029457
TU106666 lncRNA downstream 77507 9949589 ~ 9955787 (+) True G79139
TU106668 lncRNA downstream 84808 9956890 ~ 9958311 (+) True G79141
TU106695 lncRNA downstream 182639 10054721 ~ 10056138 (+) True G79166
TU106694 lncRNA downstream 184385 10056467 ~ 10058746 (+) True G79165
XM_015603511.2 mRNA upstream 51155 9766166 ~ 9819445 (+) True greb1
XM_007240769.3 mRNA upstream 51155 9766166 ~ 9819445 (+) False greb1
XM_015603512.2 mRNA upstream 51155 9766166 ~ 9819445 (+) False greb1
XM_022672681.1 mRNA upstream 51155 9782683 ~ 9819445 (+) False greb1
XM_007237296.3 mRNA upstream 315875 9495449 ~ 9554725 (+) True spata17
XM_007240767.3 mRNA downstream 10924 9883006 ~ 9940006 (+) True LOC103029457
XM_007239248.3 mRNA downstream 370506 10242588 ~ 10252495 (+) True LOC103026171
XM_007239249.2 mRNA downstream 410583 10282665 ~ 10292293 (+) True LOC103026492
XM_007239250.3 mRNA downstream 456886 10328968 ~ 10336716 (+) True LOC103026974
XM_015603051.2 mRNA downstream 480332 10352414 ~ 10362045 (+) True LOC103027561
XR_002650310.1 other upstream 316072 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1320632 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1320632 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1332918 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2141599 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 935289 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1682600 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 2029013 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 2192762 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 4053787 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile