RNA id: TU106666


Basic Information

Item Value
RNA id TU106666
length 673
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G79139
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 9949589 ~ 9955787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATCAGGAGCAAACTGCTCGCGTTCATAAATGGTGATACACAGAACATCCTGATACAGGTCCTTGATGTGAAATTGGCACTGAAAATTCCACTTAGGGTTAACTGTGTCATTTAGGGTGCGTGAGGTGTAGCACTGGGCACCCATGGTCACCTCACAATATGGATTGCTCTTTCCACTTGGTTTAGAGGATTTAAGCTCTGTGGCCTCCTGGATTGTGACAAGTAGCCGGCCAATTCCACTTGCTTTCATTGAGCGAGCTTGATAAGCCTTCTCTCGTTTCTTTTTCTCCGTCTCGATAAATTCCTCGGAAGCTGCTTTAATCTTCTGAACCCATGCCGTTCTCTCATTGATGTTCTCTGTCTTGAGGGTATAGACCCTGTCAATGTGAGAGATGTGGAAGACAGGCTCATCACTGGATGGGTCGGATGGCATCTTTACCAGGACTTCATTCAGGAACACAGGCTGGCAAAGACAGCAACATACAAAAACATTCTGTCATGTGTTTAAGTGGCTCAAAAACTTATTTaacatggaaaaaaagagatctAAAGATCAAATAAAAACCTTCAGGGGAAGTGTCGCTAAACATCTGTAAGCAATGTAAAACGCAGTTATAttcatattagtggtgtcaatttaaacactagtatatacttgtacgTTTGAGAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106647 lncRNA upstream 76870 9870600 ~ 9872719 (+) True G79123
TU106649 lncRNA upstream 77507 9870600 ~ 9872082 (+) False G79123
TU106646 lncRNA upstream 81331 9866192 ~ 9868258 (+) True LOC111193137
XR_002650280.1 lncRNA upstream 81336 9866203 ~ 9868253 (+) False LOC111193137
TU106639 lncRNA upstream 118504 9824069 ~ 9831085 (+) True G79115
TU106668 lncRNA downstream 1103 9956890 ~ 9958311 (+) True G79141
TU106695 lncRNA downstream 98934 10054721 ~ 10056138 (+) True G79166
TU106694 lncRNA downstream 100680 10056467 ~ 10058746 (+) True G79165
TU106706 lncRNA downstream 151843 10107630 ~ 10113283 (+) False G79174
TU106705 lncRNA downstream 154989 10110776 ~ 10113321 (+) True G79174
XM_007240767.3 mRNA upstream 9583 9883006 ~ 9940006 (+) True LOC103029457
XM_015603511.2 mRNA upstream 130144 9766166 ~ 9819445 (+) True greb1
XM_007240769.3 mRNA upstream 130144 9766166 ~ 9819445 (+) False greb1
XM_015603512.2 mRNA upstream 130144 9766166 ~ 9819445 (+) False greb1
XM_022672681.1 mRNA upstream 130144 9782683 ~ 9819445 (+) False greb1
XM_007239248.3 mRNA downstream 286801 10242588 ~ 10252495 (+) True LOC103026171
XM_007239249.2 mRNA downstream 326878 10282665 ~ 10292293 (+) True LOC103026492
XM_007239250.3 mRNA downstream 373181 10328968 ~ 10336716 (+) True LOC103026974
XM_015603051.2 mRNA downstream 396627 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA downstream 396627 10352414 ~ 10361816 (+) False LOC103027561
XR_002650310.1 other upstream 395061 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1399621 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1399621 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1411907 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2220588 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 851584 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1598895 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1945308 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 2109057 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3970082 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile