RNA id: TU106694


Basic Information

Item Value
RNA id TU106694
length 2130
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G79165
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10056467 ~ 10058746 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttttttatttaagtatcaAGATGTCCTTTACAAGAAGTACTGCTTGCCAAGATATCATTTACTGTGTATTGTATAACTAGTTTGTGCAGCACCACAGGTGTCAGGCTgatattaatatgttttaaagtttgaccTCATGTTTTAGACTACCTGTAAATTCACACACTGCATTATTTCACAGCAGCATTAACTACGAGCCTGCTGCCCAAAACTAGTGGACTCCTGCCCTCTACTGGCATAGAAAAATCAATACAAGAACAACAAACATCACATTTTAGCTTTGGAAGACGATAAATATTCCTGAGTTTAAATCCGGAGGTTTGTTGGCAGTTAAATTCACATCCACAAAGTATAAAACACTTTCAGTCAGCTTCTGCGACTGAATTACACTAAATTACACTGCAggctaaaatacatttatcttaCAAATATACTTgatgtaattaaaaataatattaaatacaaccCTATAAAATCCTACCTATCTTACTAATAGATATGGCTGTATAAAAAAGTGATGGCTTCCTAGTGTATTAAACTTATTTGGAGTCTCACCAGGGGGAGCTGTCAATACAACATTTAGTTGAAGTAATCTTTCACTCTAGCCCACAGTTCTTGTACATCAGGCTAGTCAGTTGATAGCATCCCTCCCTCTTCACTAAACTATCCTGGGTAGCTCCTTTACCTCAGCATGCATCTGTCTCAGCACTAGCAGTAGCAATGTGCTAATGTGCTAATACGCTAAAGGAAATCTAGACAAAAAGTCTAGAAGTGATTCAAGTAGTTCAATCTAAACCCTACTGTATCCTCTCACTAAACGGTTTAGAGGTTTAGGACTAAACTATGACATCATTTCATCGCAAACTATGACATCATTTTAAAAGCTAACACCTAAAGAAACGTGGACTCCAGAGGTTCATGCTCAATCTTCTAAtattctctaacaaaccacaaTTGAGCTTCAGGACTAAATCATTCCTAATGTCTTATGGTTAGAGTATTTAACTGAAGATCTCATTATTGAAACCTCTAACCTCAAAACTAAAGCCAAAACAAATTCAAGTCTAAGAGAGAATAGTATTTAAGTTTAACTAATTAAACATTGAACTTTTGAAATTAAAAGCTAAGAAATGGGGACAATTATCCTCAATCTGATGTTTGTGCTCAgttgtcagtgttttatatcTGCAAGTTCAACCTTAAACCAGAGTATTTCATTAACTCTTTCAGGATTTACACATGGAATTCAAACTCTAATGCAAAAGGAAACATGAACATATCCTTAGACAGGGGTTCCTGTCTAATCATCACATCCtcagaaactcatcatttctaaAATTCAATCCTGACATCAAagatttttctgaatatttaagGATTGAAACGGGATTCTGAACTGCAAACTCTAAGAGATAACATGGTAAGTTCTGTGTTAATTTTCACTTCATGGCACTTCAGAGTCCAGACTCAGTTCAGGTTCAAAACAATGTCCAGTCTTATCATCCCACTGGAAATTGGAATATGTTGAAATCGGTGGTCAATATAAtcctaaatgcaaaaaaaaatatttctgaaaatatttcattatattatattttcctaTGGAATATTTAGAGCTGCCTCACACATTTAGGGGAGATGATAACCGTATGATCAGCTCCTTCTGGCTCAGCTTTTCAGCAGGTCTCCCAGATCGTAGGTATCAAAAAAGTCTGAAACTCCCTCTCCGTCATCCAGACCCCAGAGGTAGTCATCGTGGTCAATAGGGGGAGAGAAACTGACAAAGGACTGGTCAGGGGTAAAGGATGTGCTGGGCAGCTGATCTTCAGTGATCTGGAGTAGGCTTGGGGGAAGACCCAGAATTTTCTCCACGTCCAGCAGGGCAGCTCCGTTATTGCTGCTGTCCATCGGGGGCTGGGGTTTAGGGGGTATGGCTTCAGGGGCGTGCAGGGGTTTGGGGGTGTATGGGTGATGTGGGGTGTTGGTTTGAGTTGGGTGAGTGACCCCGTTGCTGAAGTCCCTCCTGGTTGCCTTCACCGGACTCACGTCCTCCAGACCCTCCTCTGGACACAGGTAAACTTCAATAGCCCCATTCCTGCTCTTCAGGTAGATCTGCATATTGCCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106695 lncRNA upstream 329 10054721 ~ 10056138 (+) True G79166
TU106668 lncRNA upstream 98156 9956890 ~ 9958311 (+) True G79141
TU106666 lncRNA upstream 100680 9949589 ~ 9955787 (+) True G79139
TU106632 lncRNA upstream 101429 9939117 ~ 9955038 (+) False LOC103029457
TU106647 lncRNA upstream 183748 9870600 ~ 9872719 (+) True G79123
TU106706 lncRNA downstream 48884 10107630 ~ 10113283 (+) False G79174
TU106705 lncRNA downstream 52030 10110776 ~ 10113321 (+) True G79174
TU106716 lncRNA downstream 72273 10131019 ~ 10131317 (+) True G79183
TU106726 lncRNA downstream 101982 10160728 ~ 10165644 (+) True G79193
TU106712 lncRNA downstream 130994 10189740 ~ 10192215 (+) True G79179
XM_007240767.3 mRNA upstream 116461 9883006 ~ 9940006 (+) True LOC103029457
XM_015603511.2 mRNA upstream 237022 9766166 ~ 9819445 (+) True greb1
XM_007239248.3 mRNA downstream 183842 10242588 ~ 10252495 (+) True LOC103026171
XM_007239249.2 mRNA downstream 223919 10282665 ~ 10292293 (+) True LOC103026492
XM_007239250.3 mRNA downstream 270222 10328968 ~ 10336716 (+) True LOC103026974
XM_015603051.2 mRNA downstream 293668 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA downstream 293668 10352414 ~ 10361816 (+) False LOC103027561
XR_002650310.1 other upstream 501939 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1506499 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1506499 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1518785 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2327466 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 748625 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1495936 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1842349 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 2006098 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3867123 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile