RNA id: TU106716


Basic Information

Item Value
RNA id TU106716
length 299
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G79183
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10131019 ~ 10131317 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcataccggtctttcgccttgaagcacagccgtccgtctgcatcaacttttctttttctggacattatgggataaacatttatatgtctcaattccacccgcgaagttacaccttccctccggcagggtttccacatcaatgactacactgccgtgtagtggcagtaagccgtaactttgcgggtaatacaatcgacaagcattgtgggaaatgtattttttggtcaaagaacgcttctgacctatttattatagacactaagattttacaagctctcgcgggccacataaaaagacgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106705 lncRNA upstream 17698 10110776 ~ 10113321 (+) True G79174
TU106706 lncRNA upstream 17736 10107630 ~ 10113283 (+) False G79174
TU106694 lncRNA upstream 72273 10056467 ~ 10058746 (+) True G79165
TU106695 lncRNA upstream 74881 10054721 ~ 10056138 (+) True G79166
TU106668 lncRNA upstream 172708 9956890 ~ 9958311 (+) True G79141
TU106726 lncRNA downstream 29411 10160728 ~ 10165644 (+) True G79193
TU106712 lncRNA downstream 58423 10189740 ~ 10192215 (+) True G79179
TU106914 lncRNA downstream 214199 10345516 ~ 10348155 (+) True G79341
TU106919 lncRNA downstream 257087 10388404 ~ 10391520 (+) True G79345
TU106900 lncRNA downstream 270177 10401494 ~ 10423882 (+) True G79334
XM_007240767.3 mRNA upstream 191013 9883006 ~ 9940006 (+) True LOC103029457
XM_015603511.2 mRNA upstream 311574 9766166 ~ 9819445 (+) True greb1
XM_007239248.3 mRNA downstream 111271 10242588 ~ 10252495 (+) True LOC103026171
XM_007239249.2 mRNA downstream 151348 10282665 ~ 10292293 (+) True LOC103026492
XM_007239250.3 mRNA downstream 197651 10328968 ~ 10336716 (+) True LOC103026974
XM_015603051.2 mRNA downstream 221097 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA downstream 221097 10352414 ~ 10361816 (+) False LOC103027561
XR_002650310.1 other upstream 576491 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1581051 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1581051 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1593337 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2402018 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 676054 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1423365 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1769778 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 1933527 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3794552 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile