RNA id: TU106961


Basic Information

Item Value
RNA id TU106961
length 1455
lncRNA type inter_gene
GC content 0.50
exon number 9
gene id G79379
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10452410 ~ 10468725 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCTTCAGTTTTAAGCGTCAGTTGTCTCTGCACTTCACTGAGCTGTTCTGTGAGTTTGGAGACCTTTTCCTCCAGACTGCTCTGAGTTGTCACTGACTGGCCGTCAGACGTCTCCAAACAGGACTGGGCAGCCTCAGCATCTCGTCTAATCCCTGCAAGGTCACAGGACATGGAATCCAGCATCCCATCCAGAGATGGAGGCTCGTCCACCTTGGAGTATTCTTCGCCATCACAATCAGCCTCTCCAGTAGATTTCCCCAccaattttttgaagatttcaATTCGTCGCTCACACCTCTCCTCAacaagctctctctctttggaaATGCGCTCaTTGTAGTCTGTCTGCATTTGGGAGAAGAGCTCTGAGAATTCTTTGGTGACTTCCGCTCGAATACGACATTCTAGTGTCTGGTTTTCTGCAATTGCTGTTCTCAGCTTTTCCTGGAGCTCTTCCAGCACCATCAGCTGATTCTCATATGCCTCTTTATCCAGTAGCACCGTCTCTTTCCCTTCCTCATCATCTGAGTCTTCCATGGTGTCCTCCATGACGCTCTCCGCTTCCTCCTCAGAGTCTGCATCCTCTTGGACGTCCTCCAGACTGTGCTCCCACCGCACCAGTGAACTGCGGCGCGCCCCTTGCTGACCTGCATTATTGATGATTAAGGAAACCTTCCGAGCGCTCTTCTTCACCACCAACGGCACACTGGTAGCAGTGGTGAGGACCACAACctTCTGTGCCACAGCGGAGAACTTAAGCACGTTGAGGGTCTCGTCGAACATGGACGCGCACTGGTTGATGTTCACGATCATGCAGGCTTTGCCTCGgccggtgaagtagccctgcaGGTAGTGTGTGAGCTTACTCTCCCGGAAAGGAACATGTTGCCTTTAAGCGCATTAATGCATTTGCCCAAGCTCAGCAGAGAGGTGTTGATGTTTCCCGCCTCCTTTAGGCGATCGCCTTTATTCTGAGTTTTGCCACATCTTTCGGATCCCGCCAGATCGCATAAGGACAGCTCGCTGACAGACTCCACTCTAGGTATGCCCAAATCCTCAATCCGCAGAATCCGGACAGAAAAGATACTGTGACTTCTGCTGGACAGTTGGttaagtctggtggaggagatacTCTGGTTTTTCTTTCCcagtttcattactttaaaggcCTCCTCGGCACTGTTCACCTGTACCCAGCGCAGATcttttataaaggagtttcctTTGATGTCCTGGCAGAGACGCAAGTTGGTCCTCCGTACCGcattgctgggtggttgctcgAGTAAATCATGTATGTTCTCATTATAGATCTCACAAAACGAGACCCACACAGAGAACTTGCTGTGGAGGTCCATATCCAGGCTGAATCTATTCTTACTCACTGTACCGTCCAATTCACCCAACTCTTGACCTTCAAACACCTTGGACGTCAGCAGGCTAGACATACTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106900 lncRNA upstream 38603 10401494 ~ 10423882 (+) True G79334
TU106919 lncRNA upstream 70965 10388404 ~ 10391520 (+) True G79345
TU106914 lncRNA upstream 114330 10345516 ~ 10348155 (+) True G79341
TU106712 lncRNA upstream 270270 10189740 ~ 10192215 (+) True G79179
TU106726 lncRNA upstream 296841 10160728 ~ 10165644 (+) True G79193
TU106967 lncRNA downstream 8938 10477663 ~ 10558011 (+) True G79381
TU106973 lncRNA downstream 37612 10506337 ~ 10557504 (+) True G79384
TU106974 lncRNA downstream 69408 10538133 ~ 10556868 (+) True LOC103025860
TU106985 lncRNA downstream 161234 10629959 ~ 10635012 (+) True G79395
TU106989 lncRNA downstream 183130 10651855 ~ 10652324 (+) True G79399
XM_015603051.2 mRNA upstream 100440 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA upstream 100669 10352414 ~ 10361816 (+) False LOC103027561
XM_007239250.3 mRNA upstream 125769 10328968 ~ 10336716 (+) True LOC103026974
XM_007239249.2 mRNA upstream 170192 10282665 ~ 10292293 (+) True LOC103026492
XM_007239248.3 mRNA upstream 209990 10242588 ~ 10252495 (+) True LOC103026171
XM_007238109.3 mRNA downstream 69354 10538079 ~ 10553208 (+) False LOC103025860
XM_022672473.1 mRNA downstream 195733 10664458 ~ 10666674 (+) True LOC111193128
XM_007238106.3 mRNA downstream 259123 10727848 ~ 10764714 (+) True LOC103024809
XM_007238735.3 mRNA downstream 332632 10801357 ~ 10814914 (+) True fam98a
XM_022672726.1 mRNA downstream 1108514 11577239 ~ 11637984 (+) True LOC103032219
XR_002650310.1 other upstream 907957 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1912517 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1912517 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 1924803 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2733484 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 338646 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 1085957 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1432370 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 1596119 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3457144 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile