RNA id: TU106974


Basic Information

Item Value
RNA id TU106974
length 5653
lncRNA type sense_over
GC content 0.41
exon number 8
gene id LOC103025860
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10538079 ~ 10556868 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGACTGCGCTAGGGGCTCGAGGTCTCCGTCCACGGAATCCAGCGGCGCGAGGCCACGGCGCGTGTTTGGGGAATTGTTCTTCAGCAGAAAGATGCCTTTTGATTGGACGATCAGCTGCCTCCACGCGGAGGTGAGAGCAGCCCCACTGCGACAGTGGAATGCTAAGGGGCCCTAGTTTCAGACCTCTGAAATCTGTGGCCCTCTAGTGAAGATGGCGGCCCAGAGGAGACACCTGGTCAGGGACTTTAACCGGTACATTACCTGCTCCATGTGCCGCGGATACCTGATCAAACCCACCGCCGTCACAGAATGCCTGCACACGTGCTGGATAAGACCCTGGAAGAAATAATCTTTAAGCTTGTGCCTGGTCTTCGTGAGAGAGGAACAGCAAGAAATTGAATTCTGGAGGAAGAATAAATCCAGAGCGAATGGTGAAGAAGGCCCCAGACCCAAGAGGATTCGGCTCAGTGAAGAAGATGATGAGAAAGATGATGAGCAGGGTGGTGATTACCACAGGAGTGACCCCCAGATCGCCATATGCCTAGACTGCCTGCGAAACAACAGCCAGTCTGGAGAGAGTATagtaaaagtgtgtGGCCTGATGAAGAAGTTCATCCGTTGCTCCACCCGCGTCACTGTGGGCACCATTAAGAAGTTTCTCTGTGTTAAGCTGAAGTTGCCCAGTTCTTATGAGCTGGATGTTTTATGTAATGGGGAAATCATGGGGAAGGACCACACCCTGGAATTCATCTACCGAACCCGCTGGAGACTGCAGGGAGACAGTGTGTATCCCATGGTTCTGGAGTACAGGCCTCGCATAGACTTCGgctaaaacagaacaaaagcaCTTGGCCGTGCGAAGATGCTGTTTTTGAGTCCTGACCGAACTTGTGTGACGGACAAAACAAGTGGATGTGGCTCCTTAGAAATATCAGTAACCCAACTTGACCGACATGGCTGCACTTTGGTTCCAACTGACCTCGGcctggctccgccccctgcAGCAGCATGTACGGCTACTCCTGTAAGACTTTTGTTGCTTGCTGTCTTCATGACAACACATCCACGTGAGGTGAAACGTTTGGGAGTTTGCTGCCAAGGACAAACAGGGTTGTGATggacagaaaacaaaaagcacttaaaaatgcaCTTCAGTCGTGTGAAAGGAAAGACTACGAATACGGTTTTGTCTCATAGGGTCACGCGTACATAGGTTAAGTAGAGGAAGTGATGAGCTCACTGATTAGAGAACTGGGTAAAGGTTAGTGTTCGGTTTCTCAGTTTTGTTCCTCTTCTCTGCTGCCTGCTTTTCTTTTGGGTTTTCCGGCTCTGTTTCTCcctgctctttttttctctctctttctctgtttttttttatctctgtctgACGCACATGCATTCTTCCACACCACACTCacctttgttttctctctctttccctcggTGCGATTCCTATAATGGTGTTTTTGGCAGCCGCCTGAGATATTAATGGATCTTATTCAGATGGGTTTGAATGGAAGGCGGCAGAATTACATTACAGTCTTATCCAGTTGAAAAGAAGTCCCAGAACAATGGCAAAAGGTCAACATCTACAAAGGGCCTAACTCTTTCAATGATAACTTTTTTCAATGAAAACCAAAGCAGAATATTTCTTATTCAGATCTCTAGGTTTTAATCTAATCTATAGATTTGAACTATGCTGTTTATGTGAACATTTGAATGATCAGATAAGGGCAGAAATCTAATTATTGTCCATAagccaaaataaaaaaggccAAAAAGGATATACAGGGTTATATTAGAGCTTCGCAAGAAAGTGATGTTGTATATGGGTCCTTGTGTAGTGTGTACTTTGAAACGATACATTCTGATCTCAGATGCTTGCGGTAAAAAGTAGATGAGGCTTTAATACTAAGGGCAAAAAACGAGCCAAAAGACAAAAGAGAAAATCTGTGACAAaaatgtagttaaaaaaaaacagagaacacaATACAAACGGAGCAAAACAGCTAACCAAAAATCTAAGTCAAACACGAGGAAAAAAGATGTCAATACACGGAAATACAATCAGAAAGTGAATGCTCTGTAGATAAACAGTTTCGATACTTCatgtcaataaaaataataaaaaaacaaacaggttCATATACACGTACAGATTAGTCACAGCTGAAAACCATTCTAGAATTACGGAGATGAGGAGCATGAGAAAGTGCAGCGATTGGAGGCCAAACATTCAATGTTGTTAGAtgcatgctggggattgtagttctGGAGCGACACATGTCCATTGATGGGAAGGGGAAAGACAGAGTTAGGAACTACAGTGTCTGTATCAGGTGTTACATACTTATATAGGTGCCTTTAAAAGAAATTGTGTCAAACTGAATGGACCTTTAAGACGAGTCCAAACATAAAATCTTATTACCACAATCTaaattttaacaataaatacatcacaAAAGAGTTGTAGTAACATTTTGAAGAATAGAATACTTAAATTGTATTACCTTAACTTACCCAAACTTACTTGTATTTCCTTACCCAAACTTAAATTGTATTACCTGTATTCAGCAATAGAGGGAGCTCTTCACCCTGCAAACTGTGAACACGTAACCTaactaggctggaggcagaatgaggtagaggtccacagtgaacacacacacacaccaaactactgCTTAGCCTGCAAAGAATAAACGTATCCAAGCCAATAGAGCCAAGTGCTGAGAAAACATGAAGGATCTAGAATTCATTTAGgatcttaaattattatttttttgtatatttaacagTGTTCTAGAGTTCTAGAGATGTGAGGTTTTGTTACAACAGTGATGCCAGGCTGGTGAATTCAGGTACCAAACTTGAAGACATATCTTGCCCAGGCTTTATAGTTATGTGAATGATTTGAATATGTCTGTATAAAGTCTATATTGTGAACATAATCTGGCAAAATACTCATTTAATCTATGTGATCTAAACCAAAACAACAGGCTTTGCAAGACTTCCAGTTGGAAGGACAGTCTGTTCAGGACAGTTTGGAACATCATGACAGGGAGTTCTGTGTGTTCATATATTTTTGGCTTTATGAGGGTACGTTTAGAGATCTGCATCATCATGTgctgtaattaattaaatctcCTTGCTGCTGCAGTAGATTTCTGCATCTTATCTTAAGGTCTAGTTTAGATAATACTAAAGGACTGCCAACATCAGTTTGAGGAGCATTCCCAAAaagttagtgttagtgtttggTTTCATTAGACTGAGTGCTCTGTGACTGGAATAATGCCAGTCCTTCCTCACAGCATGTTAACTGTCTGTATGCCAGACTTCCCTGTTCCTACAGCTTTCCTCACTTTTCAGAAAGTAAAGTCAGTGTTGTTCACAGGCTTCAGAGCAGGGATGTAAGGTaatatgaaattaattaattagttaacatgtaaagattggtgtcagaagtggttcatttagtgttgtgattaaaccccacccactaaATTGTACTATGTCGTTAGACTTGGGTTCTAATTGGATGaaaagtaaacttttatttagattttataaatatgatattgGGTTTTTATACTATAGAGTTTTACTAAGGATAGCAATATATCGTAATATTGTTTAGAATATTgaaatatatcatgatatattgaATAGAGATGGAAAGAATGATTAGCTGTTTATTGGTATCTGCCTATGTTCAGCCAGAATATGCAATCAGCCACTATTTCTCAAATACCATTCCGTTCCGAGTTATCAGGGTTCCctcgggtccttaaaaagtcttaaattgtcttaaatttacactgtgtttaatgcCTGTGGGAAGTTAgatgctaatgcttctccagcagtgctagtcggggtaagcagcaggctgccgataatactcacctctgaatggtaaaagatctagcggttagcggctaatgctaatactgctccagcctcgggcTAAATTAAAACTCCTGTGTAATGCTGTACCTTACCTGActtgtaaaattcatacataagttgcaccggattaaaaggcgtactgatgattttgggggaaattaaaggattttaagtgcgctttatagtgcgaCAAATACggtaaatctaaaaataaacaatacaatcttggcacagagtggtccagcagtctaaagcgctgccgctatgagcgggaggtcacaggttTGAACCCCATGCCAACACTcaaagggagcaaaattggcctctctctccccacatcactaaagggtgatgtctgcagcacagagcgtatgtgagctgatgtatcaaaaccgagttgctgcgctttcctccgagggcgctggctactcggcaatgctgcatcagcagcagctcgaaaagaagcggtggctggcttcacatatattggaggaagcatgtgttagtcttcaccctcctggtgtgttggggcattactagcaacaggtggagtcctaatgagtgagttggatCATTGGCGGAGcagaattggggagaaaatggggtaaAATTAGTACTGCAACTTTTGTAAGGGCACCTGGTAGCTTACAACAGAAATAGAATTTAGGCTAGTTTCACACAGCAGGAACAAAGTCTGATCAGTTTTTTACCAATTCCAATATTTTTccaattataatttttaatatgaCTTATTTCCGACATTTATCTGAACAGTTTACCTTCCTAAACTGACGGTCATGCGCAAAACAGCAacgcttcacatgaagtttcagtttcatcttctccagaATCACAGGAGCTATTAAAGAGTTTCATAGAATGACAGCTGGCCTATCACCAGCAATACATTCCAGCTCCCTGTAAAAATGCCATGTTAATTCAGCTACACCCCCTTCAGACAGTGGTAGCAATACGTGCCTTTAAATTTAGCCACACTTACCCACGCTGCTATCCCACCACTAAAAACCTTACTCACTGTTCCCGTACATTTTCCCTTTTCCTCACAGCCTTAACCCCGCCCCCTTTGTGTGTTGAGCTGCCCAGTGCTGCATAAGGCTGTGTATggttcaatatattgcaatacagtATTACAAAAGAAAATTTGCTTTGGTGGCATTTTAATGTCTTTCTTCTGCCAGCACTGGAGCATTGTGTGATGGAGACATCATAGCTGGTGATTGGGATAAGGAATTGTATAATGTTcataccgtttttattagtggTGCAACTCTGTGATCACTCTGTAAAAAGTCCAGCTTTGCACAAATGCTGCCCAGGTAGACGTTGTCCTTTTCTGCCAATAGGTGTTTTGTTTGGGAAAGCAGATCCAGAATTAAATGCACCTGAATTgaacacaaatacagctctgaaaaaaataagagattaaaaaattgatgagtttctttgattttaccaaattgaaaacctctggaatataatcaagaagaaaataaatgattacaagtcatcaaactaagctgaacttcttgaatgtttgcaccaggagtgacataaagttattcaaaaacagtgtgtacgactggtggaggagaacatgccaagatgcacaaaaaattgtaaagaccagggttattccaccaaatatggatttctgaactcttaatactttatgaatatgaacttgttttctttgcattatttaagggtctgaaagctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106960 lncRNA upstream 69408 10452410 ~ 10468725 (+) True G79379
TU106962 lncRNA upstream 69408 10456306 ~ 10468725 (+) False G79379
TU106961 lncRNA upstream 69408 10462485 ~ 10468725 (+) False G79379
TU106900 lncRNA upstream 114251 10401494 ~ 10423882 (+) True G79334
TU106919 lncRNA upstream 146613 10388404 ~ 10391520 (+) True G79345
TU106985 lncRNA downstream 73091 10629959 ~ 10635012 (+) True G79395
TU106989 lncRNA downstream 94987 10651855 ~ 10652324 (+) True G79399
TU107007 lncRNA downstream 185622 10742490 ~ 10744266 (+) True G79412
TU107013 lncRNA downstream 219831 10776699 ~ 10777628 (+) True G79417
TU107023 lncRNA downstream 233814 10790682 ~ 10792779 (+) True G79423
XM_015603051.2 mRNA upstream 176088 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA upstream 176317 10352414 ~ 10361816 (+) False LOC103027561
XM_007239250.3 mRNA upstream 201417 10328968 ~ 10336716 (+) True LOC103026974
XM_007239249.2 mRNA upstream 245840 10282665 ~ 10292293 (+) True LOC103026492
XM_007239248.3 mRNA upstream 285638 10242588 ~ 10252495 (+) True LOC103026171
XM_022672473.1 mRNA downstream 107590 10664458 ~ 10666674 (+) True LOC111193128
XM_007238106.3 mRNA downstream 170980 10727848 ~ 10764714 (+) True LOC103024809
XM_007238735.3 mRNA downstream 244489 10801357 ~ 10814914 (+) True fam98a
XM_022672726.1 mRNA downstream 1020371 11577239 ~ 11637984 (+) True LOC103032219
XM_007242500.2 mRNA downstream 1253365 11810233 ~ 11823175 (+) True pex13
XR_002650310.1 other upstream 983605 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 1988165 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 1988165 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 2000451 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2809132 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 250503 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 997814 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1344227 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 1507976 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3369001 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile