RNA id: TU106989



Basic Information


Item Value
RNA id TU106989
length 427
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G79399
representative True

Chromosome Information


Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10651855 ~ 10652324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TGGGCAAGTGGTGTGCCGagaacaatctctctctgaactccTCCAAAACAAAAGAACTAATTATAGATttccggaggaaacccacagaCCCCACACCACTCTTCATTAACGGGGACTGTGTGGAAAGAGTCCCCTTCTTCAGATTCCTGGGTACGTACATCTCTGAAGATCTCTCCTGGACCACAAACACCACAGCTGCAGTCAAGAAGGCACAGCAGAGACTCTATTTCCTGAGAATTCTCAAGAAAAACAACATTCAAGAGAAGCTGCTTGTGTCCTACTATCGCTGTGCCATTGAGAGTTGGCAGAAAGGAGAGCACTACAGAGAGTGATCAACGTGGCCCAGAAGATCACCGGCTGCCCGCTACCCAGTCTAGAGGACCTGTTTAGCTCTCGCTGTCTCAGCAGAGCAGCCAACATCCTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU106985 lncRNA upstream 16843 10629959 ~ 10635012 (+) True G79395
TU106967 lncRNA upstream 93844 10477663 ~ 10558011 (+) True G79381
TU106973 lncRNA upstream 94351 10506337 ~ 10557504 (+) True G79384
TU106974 lncRNA upstream 94987 10538133 ~ 10556868 (+) True LOC103025860
TU106960 lncRNA upstream 183130 10452410 ~ 10468725 (+) True G79379
TU107007 lncRNA downstream 90166 10742490 ~ 10744266 (+) True G79412
TU107013 lncRNA downstream 124375 10776699 ~ 10777628 (+) True G79417
TU107023 lncRNA downstream 138358 10790682 ~ 10792779 (+) True G79423
TU107024 lncRNA downstream 164913 10817237 ~ 10818744 (+) True G79424
TU107047 lncRNA downstream 286174 10938498 ~ 10942103 (+) True G79444
XM_007238109.3 mRNA upstream 98647 10538079 ~ 10553208 (+) False LOC103025860
XM_015603051.2 mRNA upstream 289810 10352414 ~ 10362045 (+) True LOC103027561
XM_022672688.1 mRNA upstream 290039 10352414 ~ 10361816 (+) False LOC103027561
XM_007239250.3 mRNA upstream 315139 10328968 ~ 10336716 (+) True LOC103026974
XM_007239249.2 mRNA upstream 359562 10282665 ~ 10292293 (+) True LOC103026492
XM_022672473.1 mRNA downstream 12134 10664458 ~ 10666674 (+) True LOC111193128
XM_007238106.3 mRNA downstream 75524 10727848 ~ 10764714 (+) True LOC103024809
XM_007238735.3 mRNA downstream 149033 10801357 ~ 10814914 (+) True fam98a
XM_022672726.1 mRNA downstream 924915 11577239 ~ 11637984 (+) True LOC103032219
XM_007242500.2 mRNA downstream 1157909 11810233 ~ 11823175 (+) True pex13
XR_002650310.1 other upstream 1097327 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 2101887 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 2101887 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 2114173 8535916 ~ 8537682 (+) True G78818
TU106111 other upstream 2922854 7656329 ~ 7729001 (+) False fam167b
TU107028 other downstream 155047 10807371 ~ 10813470 (+) False fam98a
TU107323 other downstream 902358 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1248771 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 1412520 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3273545 13925869 ~ 13952198 (+) True LOC103026193

Expression Profile


TU106989 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
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TU106989 Expression in each Bioproject

Bar chart with 5 bars.
TU106989 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.