RNA id: TU107024


Basic Information

Item Value
RNA id TU107024
length 1457
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G79424
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 10817237 ~ 10818744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGCTACTGTGTGATATTTCTGAAAAGCAGTGGGCTTTATTCCAACTACTAAAAACAAGCATCCATGTAGTGTAAGTTCCTCAGTGAAGACAATTTTTCtagcaaaaataaaagtaactacgAACATGGTGGAACACCGagaaatcaagttttttttttttctacagtagcCGTGACAAATACAGGAATGCTAACAAAATCTCAAAATATGCTCATCAGAAAATGAtacacaatgaaaaaaaaaatgtcttcagctttgttttttctataaaaatacactatattttaaataacattactttaaattaatccTTGAAAATAACACTCATTTGTATTTGTCAGAGTAGTTCATAGAGTCCACCTTAATTATAAACATCTAAATATCGTTTCCACCAAAAGGATCAAAAGCACAGAATGAAACGAGTCCCTTGCTGTCATAAATTCAATACAGTTGGTCAAGCTTGCATCACAGATAAAGGCCCTGAGTCATTAATAAATATCAGTATTACCCCAACAAATGTACTCAAAATATGGCAAGCTGTCCTTTAAAAACATCATATGTTTAATTTCAATTAAAACCAATTCAGAATTAGAACACTCTCAAATCCAGTGTTCTGCAGATAAAACTCCATTCAGAGACAAACGAATGAAGTTTGTTCTCTCTGCAGGTTTGACTGCTATTGAAGATCCACGAAACACTGCGTTTAAGTGAATTAAACGAAACGAAATGCTCAAGGTTTACTCAAGCAGACCAGTTCAGATCAGTGATGAAGGCCATGATAATTATAATGGTTGCATTAATACTACAAAAAGCCTATacaagaataatttaataatgtaaaattcaACAAAACGAAACAACATAGAAATGTGTCCCAAGCTACAACTTTTTAGGTCGTACTCAGCTCTTTACAGTCCCTTATTCACACAGCAACCCACAGAACACTTTAATTATTGAACAAATTAAACTAAAGGCAGTTTTTATTTCAGTCCATCTCCCTTAACTTTCAGTAACTAACCTCCTGTTCGGATTCTGGGTGTCctcactataaaaaaataataataatgctagttTTGAACAGAAGTATTTATTGTGTGGCAGTATGTTTCTATTTCTAATTGtactttattacattacatttgctTAGTTTAGTGCTTAACCTTTAGACCTTTTATGTCAGCCCACAACGCACAGCCTCACAACTACAGTGCTATAATTTTTACCGTCAGTTTCATACGCCCTACCAAAGAGCCCTGTGGAACTCCACAAAACATGCCAACCAGTTGATAACCAAGTAATTCCCAATAGTTTTTGCAAAAGGATTAATAGCTGAATTATTAACCTAGGGTTAAAGGGTGTGCtctttttcttagtttttggGTTTGTTCTAAtatacacaaagaaaaaaaatgcgaTAATTTTCTAGAAACATTTTAGGGGTGCCAACACTTTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107023 lncRNA upstream 24458 10790682 ~ 10792779 (+) True G79423
TU107013 lncRNA upstream 39609 10776699 ~ 10777628 (+) True G79417
TU107007 lncRNA upstream 72971 10742490 ~ 10744266 (+) True G79412
TU106989 lncRNA upstream 164913 10651855 ~ 10652324 (+) True G79399
TU106985 lncRNA upstream 182225 10629959 ~ 10635012 (+) True G79395
TU107047 lncRNA downstream 119754 10938498 ~ 10942103 (+) True G79444
TU107048 lncRNA downstream 119754 10938498 ~ 10955362 (+) False G79444
TU107062 lncRNA downstream 298845 11117589 ~ 11119528 (+) True G79458
TU107089 lncRNA downstream 501799 11320543 ~ 11466093 (+) True G79483
TU107109 lncRNA downstream 637155 11455899 ~ 11456234 (+) True G79501
XM_007238735.3 mRNA upstream 2323 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 52523 10727848 ~ 10764714 (+) True LOC103024809
XM_022672473.1 mRNA upstream 150563 10664458 ~ 10666674 (+) True LOC111193128
XM_007238109.3 mRNA upstream 264029 10538079 ~ 10553208 (+) False LOC103025860
XM_015603051.2 mRNA upstream 455192 10352414 ~ 10362045 (+) True LOC103027561
XM_022672726.1 mRNA downstream 758495 11577239 ~ 11637984 (+) True LOC103032219
XM_007242500.2 mRNA downstream 991489 11810233 ~ 11823175 (+) True pex13
XM_022672727.1 mRNA downstream 1067492 11886236 ~ 11962874 (+) True kiaa1841
XM_022672723.1 mRNA downstream 1184049 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA downstream 1184050 12002794 ~ 12040710 (+) True LOC103021592
TU107028 other upstream 3767 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 1262709 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 2267269 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 2267269 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 2279555 8535916 ~ 8537682 (+) True G78818
TU107323 other downstream 735938 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 1082351 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 1246100 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 3107125 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 3907183 14725927 ~ 14728799 (+) True G80648

Expression Profile