RNA id: TU107089


Basic Information

Item Value
RNA id TU107089
length 347
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G79483
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11320543 ~ 11466093 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTAATAAGACCTTGAAGGCACAGGCAAAGCAGACAGAATCATGTGACAGCTGTGTCCTTCACGTGCTCTATGTGGCCATGACCAGAATGAAAATCTCCGAAGGCTCCACAGCTTCGAGATTAAAATCCGTTTCAGTacacgcaacacacacaccaggatAATTTATACGGCTGCCTATGCTAACGACGCTCTTCAGCCTTCAGGAGCCGACCACATATtaagggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgagtgcgtgtgcatgtgtgtgtgtgtgagtgtgcatgtgtgtgtgtgtGTGTGTGCATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107062 lncRNA upstream 201015 11117589 ~ 11119528 (+) True G79458
TU107048 lncRNA upstream 365181 10938498 ~ 10955362 (+) False G79444
TU107047 lncRNA upstream 378440 10938498 ~ 10942103 (+) True G79444
TU107024 lncRNA upstream 501799 10817237 ~ 10818744 (+) True G79424
TU107023 lncRNA upstream 527764 10790682 ~ 10792779 (+) True G79423
TU107110 lncRNA downstream 9551 11475644 ~ 11479105 (+) True LOC107197512
XR_001518605.2 lncRNA downstream 10091 11476184 ~ 11479120 (+) False LOC107197512
TU107114 lncRNA downstream 29491 11495584 ~ 11498178 (+) True G79504
TU107305 lncRNA downstream 60755 11526848 ~ 11527186 (+) True G79637
TU107306 lncRNA downstream 65464 11531557 ~ 11531807 (+) True G79638
XM_007238735.3 mRNA upstream 505629 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 555829 10727848 ~ 10764714 (+) True LOC103024809
XM_022672473.1 mRNA upstream 653869 10664458 ~ 10666674 (+) True LOC111193128
XM_007238109.3 mRNA upstream 767335 10538079 ~ 10553208 (+) False LOC103025860
XM_022672688.1 mRNA upstream 958727 10352414 ~ 10361816 (+) False LOC103027561
XM_022672726.1 mRNA downstream 111146 11577239 ~ 11637984 (+) True LOC103032219
XM_007242500.2 mRNA downstream 344140 11810233 ~ 11823175 (+) True pex13
XM_022672727.1 mRNA downstream 420143 11886236 ~ 11962874 (+) True kiaa1841
XM_022672723.1 mRNA downstream 536700 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA downstream 536701 12002794 ~ 12040710 (+) True LOC103021592
TU107028 other upstream 507073 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 1766015 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 2770575 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 2770575 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 2782861 8535916 ~ 8537682 (+) True G78818
TU107323 other downstream 88589 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 435002 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 598751 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 2459776 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 3259834 14725927 ~ 14728799 (+) True G80648

Expression Profile