RNA id: TU107312


Basic Information

Item Value
RNA id TU107312
length 532
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G79643
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11535792 ~ 11536323 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCCaagcttagaacatttctcttaatttcattaatcttatttctaagtgattgcagaaataactaggcacaaacccctaaattggtataatatttggtgaattaacaatttccaaggcattaattaagttttgacaCTCTCTTAAGTCCGCAGTCCCGTCCTAGTGATGGTGTTCATTTGGTGTTCCAAATGTTTAACATTAACTCCGAGGTTTACGACTTGGAGGAATGTCAacagaattttaccctaaactcgcatttagggctcttgagcgaggctgagtgaagaaatagtcaggaaatgtcattttgaaatttaaggttgtttgaaaaagattactccaaggCTTCTAGAGTGTTCTTCTGGGGGTGATTGTAAAGTTAGAACATTCCTTTTAGACCATAAGatgggggtagtgtgtgtgtgtgtccaagcaATGAAGAAATCCTCTGTTTAATCCACTACACAGGAACGCCAGTTCCGGGCCGCCAGCAAGCCGGCCCACGGCAGGGATATCACAGGCAGCTGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107308 lncRNA upstream 2928 11532334 ~ 11532864 (+) True G79640
TU107307 lncRNA upstream 3642 11531898 ~ 11532150 (+) True G79639
TU107306 lncRNA upstream 3985 11531557 ~ 11531807 (+) True G79638
TU107305 lncRNA upstream 8606 11526848 ~ 11527186 (+) True G79637
TU107114 lncRNA upstream 37614 11495584 ~ 11498178 (+) True G79504
XR_002650326.1 lncRNA downstream 8353 11544676 ~ 11546017 (+) True LOC111193196
XR_002650327.1 lncRNA downstream 9957 11546280 ~ 11546774 (+) True LOC111193197
TU107328 lncRNA downstream 23457 11559780 ~ 11560109 (+) True G79659
TU107359 lncRNA downstream 155493 11691816 ~ 11692164 (+) True G79683
TU107360 lncRNA downstream 164357 11700680 ~ 11702374 (+) True G79684
XM_007238735.3 mRNA upstream 720878 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 771078 10727848 ~ 10764714 (+) True LOC103024809
XM_022672473.1 mRNA upstream 869118 10664458 ~ 10666674 (+) True LOC111193128
XM_007238109.3 mRNA upstream 982584 10538079 ~ 10553208 (+) False LOC103025860
XM_022672688.1 mRNA upstream 1173976 10352414 ~ 10361816 (+) False LOC103027561
XM_022672726.1 mRNA downstream 40916 11577239 ~ 11637984 (+) True LOC103032219
XM_007242500.2 mRNA downstream 273910 11810233 ~ 11823175 (+) True pex13
XM_022672727.1 mRNA downstream 349913 11886236 ~ 11962874 (+) True kiaa1841
XM_022672723.1 mRNA downstream 466470 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA downstream 466471 12002794 ~ 12040710 (+) True LOC103021592
TU107028 other upstream 722322 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 1981264 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 2985824 8542128 ~ 8549968 (+) False G78817
TU106236 other upstream 2985824 8543185 ~ 8549968 (+) False G78817
TU106244 other upstream 2998110 8535916 ~ 8537682 (+) True G78818
TU107323 other downstream 18359 11554682 ~ 11555139 (+) True G79654
TU107406 other downstream 364772 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 528521 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 2389546 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 3189604 14725927 ~ 14728799 (+) True G80648

Expression Profile