RNA id: TU107370


Basic Information

Item Value
RNA id TU107370
length 302
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G79692
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11747044 ~ 11747579 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttccctgtttgtttatgtacatatttatattcgttattcccctgtttgtttatttgtttatttgttatttattaaaagtttggtcttacccgcatataaatccgcctcccgtctcatcccAGCGTCACATAAAGACCGACCAAATGGATTTTGCGGGTCACCCTTGGGCTGGATGCAAGCTGGCCATCCGTCACGCTCCCTTTGGGACCCTCCGACGCGAGCCCGCTTGCCGCTTCCTCCGGGGGCCGTCCTGCACCCGGATTTCTGGTGTCCTCCGTGTCTCCTGGAGGAGGCTGACGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107360 lncRNA upstream 44670 11700680 ~ 11702374 (+) True G79684
TU107359 lncRNA upstream 54880 11691816 ~ 11692164 (+) True G79683
TU107328 lncRNA upstream 186935 11559780 ~ 11560109 (+) True G79659
XR_002650327.1 lncRNA upstream 200270 11546280 ~ 11546774 (+) True LOC111193197
XR_002650326.1 lncRNA upstream 201027 11544676 ~ 11546017 (+) True LOC111193196
TU107373 lncRNA downstream 26111 11773690 ~ 11784149 (+) True G79694
TU107374 lncRNA downstream 32245 11779824 ~ 11784827 (+) True G79695
TU107375 lncRNA downstream 36642 11784221 ~ 11784827 (+) False G79695
TU107386 lncRNA downstream 52721 11800300 ~ 11814470 (+) True G79702
TU107392 lncRNA downstream 71174 11818753 ~ 11821081 (+) True G79704
XM_022672726.1 mRNA upstream 109060 11577239 ~ 11637984 (+) True LOC103032219
XM_007238735.3 mRNA upstream 932130 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 982330 10727848 ~ 10764714 (+) True LOC103024809
XM_022672473.1 mRNA upstream 1080370 10664458 ~ 10666674 (+) True LOC111193128
XM_007238109.3 mRNA upstream 1193836 10538079 ~ 10553208 (+) False LOC103025860
XM_007242500.2 mRNA downstream 62654 11810233 ~ 11823175 (+) True pex13
XM_022672727.1 mRNA downstream 138657 11886236 ~ 11962874 (+) True kiaa1841
XM_022672723.1 mRNA downstream 255214 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA downstream 255215 12002794 ~ 12040710 (+) True LOC103021592
XM_022672719.1 mRNA downstream 255215 12002794 ~ 12040710 (+) False LOC103021592
TU107323 other upstream 191905 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 933574 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2192516 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 3197076 8542128 ~ 8549968 (+) False G78817
TU107406 other downstream 153516 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 317265 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 2178290 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2978348 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 3041023 14788602 ~ 14801837 (+) False LOC111193140

Expression Profile