RNA id: TU107374


Basic Information

Item Value
RNA id TU107374
length 582
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G79695
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11779824 ~ 11784827 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACACCTTTTAATCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACAACCCTACAATAACCTACAGTTCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACAGCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTTCTGTACAACACCCCTACAACACCCTACAGTTTTGTACAACACCCCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCCTGTACAACACCCCTACAACAACCTACAGTCCTGTACAACACCCCTACAACACCTTTTAATCTTGTACAACACCCCTACAATAACATACAGTCCTGTACAACACCCCTACAACACCCTACAGATCTATACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAACACCCTACAGTCCTGTACAACACCCCTACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107370 lncRNA upstream 32245 11747044 ~ 11747579 (+) True G79692
TU107360 lncRNA upstream 77450 11700680 ~ 11702374 (+) True G79684
TU107359 lncRNA upstream 87660 11691816 ~ 11692164 (+) True G79683
TU107328 lncRNA upstream 219715 11559780 ~ 11560109 (+) True G79659
XR_002650327.1 lncRNA upstream 233050 11546280 ~ 11546774 (+) True LOC111193197
TU107386 lncRNA downstream 15473 11800300 ~ 11814470 (+) True G79702
TU107392 lncRNA downstream 33926 11818753 ~ 11821081 (+) True G79704
XR_002650323.1 lncRNA downstream 49942 11834769 ~ 11874478 (+) True LOC111193193
TU107399 lncRNA downstream 70946 11855773 ~ 11868709 (+) True G79710
TU107401 lncRNA downstream 80562 11865389 ~ 11869720 (+) True G79712
XM_022672726.1 mRNA upstream 141840 11577239 ~ 11637984 (+) True LOC103032219
XM_007238735.3 mRNA upstream 964910 10801357 ~ 10814914 (+) True fam98a
XM_007238106.3 mRNA upstream 1015110 10727848 ~ 10764714 (+) True LOC103024809
XM_022672473.1 mRNA upstream 1113150 10664458 ~ 10666674 (+) True LOC111193128
XM_007238109.3 mRNA upstream 1226616 10538079 ~ 10553208 (+) False LOC103025860
XM_007242500.2 mRNA downstream 25406 11810233 ~ 11823175 (+) True pex13
XM_022672727.1 mRNA downstream 101409 11886236 ~ 11962874 (+) True kiaa1841
XM_022672723.1 mRNA downstream 217966 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA downstream 217967 12002794 ~ 12040710 (+) True LOC103021592
XM_022672719.1 mRNA downstream 217967 12002794 ~ 12040710 (+) False LOC103021592
TU107323 other upstream 224685 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 966354 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2225296 9495449 ~ 9554528 (+) False spata17
TU106242 other upstream 3229856 8542128 ~ 8549968 (+) False G78817
TU107406 other downstream 116268 11901095 ~ 11905385 (+) True G79717
TU107455 other downstream 280017 12064844 ~ 12076211 (+) True G79761
TU108374 other downstream 2141042 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2941100 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 3003775 14788602 ~ 14801837 (+) False LOC111193140

Expression Profile