RNA id: TU107454


Basic Information

Item Value
RNA id TU107454
length 216
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G79761
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12064844 ~ 12076211 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTGGATCTTGCGAGTTCAGCAAAAGCTGCATACCGCAGTTCTGTATCTCAGGATGTAAGGAGGAGTTTCCATGTGATTCCAGAAAATCCGCAGGAGGCCAAAACTCTCAAACGCTCTCTCACCATCTTCAGAAACGTGATCTTTTCTCTGAGTTCTGCAGGATGTCAACATGTTCCCTACAGAGAGTCTAAACTCACCCGCTCACTGAGAGACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107445 lncRNA upstream 47364 12025586 ~ 12026206 (+) True G79752
TU107429 lncRNA upstream 75646 11991672 ~ 11997924 (+) True LOC111193192
XR_002650322.1 lncRNA upstream 76427 11991693 ~ 11997143 (+) False LOC111193192
XR_002650323.1 lncRNA upstream 199092 11834769 ~ 11874478 (+) True LOC111193193
TU107401 lncRNA upstream 203850 11865389 ~ 11869720 (+) True G79712
TU107636 lncRNA downstream 32598 12108809 ~ 12109104 (+) True G79903
TU107647 lncRNA downstream 80104 12156315 ~ 12161780 (+) True G79914
TU107660 lncRNA downstream 147066 12223277 ~ 12279505 (+) False LOC103044397
TU107661 lncRNA downstream 205634 12281845 ~ 12283581 (+) True G79924
TU107798 lncRNA downstream 436791 12513002 ~ 12542649 (+) True G80024
XM_022672723.1 mRNA upstream 32860 12002793 ~ 12040710 (+) False LOC103021592
XM_022672721.1 mRNA upstream 32860 12002794 ~ 12040710 (+) True LOC103021592
XM_022672719.1 mRNA upstream 32860 12002794 ~ 12040710 (+) False LOC103021592
XM_022672720.1 mRNA upstream 32860 12002794 ~ 12040710 (+) False LOC103021592
XM_022672727.1 mRNA upstream 110696 11886236 ~ 11962874 (+) True kiaa1841
XM_022672732.1 mRNA downstream 78712 12154923 ~ 12174659 (+) True LOC111193190
XM_022672716.1 mRNA downstream 112547 12188758 ~ 12261237 (+) True LOC103024200
XM_022672717.1 mRNA downstream 112549 12188760 ~ 12261237 (+) False LOC103024200
XM_022672718.1 mRNA downstream 112550 12188761 ~ 12261237 (+) False LOC103024200
XM_022672734.1 mRNA downstream 186910 12263121 ~ 12274900 (+) False LOC103044397
TU107406 other upstream 168185 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 518431 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 1260100 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2519042 9495449 ~ 9554528 (+) False spata17
TU106236 other upstream 3523602 8543185 ~ 8549968 (+) False G78817
TU108374 other downstream 1849658 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2649716 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 2712391 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 3098784 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 3487776 15563987 ~ 15583331 (+) True G80857

Expression Profile