RNA id: XM_022672733.1


Basic Information

Item Value
RNA id XM_022672733.1
length 3212
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC103044397
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12223277 ~ 12279506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGCTGTGGGTCGGCGCTAACGCGCAGACAGTATGGCGGACGATGGGGATGGTAGgagcggagcagcagcaggcgACACAAGTGGCGGGCAGGGCGCGACGAGCACAGAGGAGCTGGATCCGGGGCCCGGCGTCGGCGCCATGCTGCTCAACCTCAGCATTTTAATCCTCGTGTTGGCCACCTGCTATGTCGTGTACAGACGGTGGCTGAGGCGGTCGGGCGCGGACGCGGCCGCGGCCAGCGAGGCCTCGCCGTTGCCCAAGATGGGCAGGCGCGACTTCACCCTGGAGCAGCTGCGGGAGTACGACGGGGCGCAGAACCCGCGCATCCTCATCGCCGTCAACATGAAGGTGTTTGACGTGACCAGCGGGAAGAAGTTTTACGGACGtgAGGGTCCGTATGGAATTTTTGCGGGCCGGGATGCCTCTCGTGGTTTGGCTACATTCTGTCTAGAGAAGGATGCACTGCGGGACGAGTATGATGACCTGTCAGATCTTAATGCGGTTCAGATGGAAAGTGTCAGGGAATGGGAGATGCAGTTtatggaaaaatatgACTATGTAGGTCGTCTGCTGAAGCCCGGTGACGAGCCGTCGGAGTACACAGACGAGGAGGACATTAAGGACCATCTGAAACACGACTGATGTGCTCCATCCATACAGCGACCAAAGCCTGAGACTCAGACCGCTaccatccaaccaacctgcCACTTATTGCCCAGACTACCCCATTTACCCCCATTACCCACACCAGGTTTCCCCCACCCTGCACCTTAACTAAACGCTCCAGACAGGTGTTTTGGTACCACTGCAGCAGAAGGCCTTCAGCAGCAACAGAGCTACACCCACGTGCTCCTGGCTGGGCTGGCTGTGGTGCGGTTTCACCATTTAATATGGGAGTATTAAATCTGTACTCACTTCAAGATATCCGTTCACACCTTGTTTTAAACTCCTGCCATTatctttactttcttttttccctctttgCCCAAATGGTTCTCAACCCCAGTTCTTATGAGCCTGCCTGATCGTTACCAAGCCAGTGATGATTGATTGTTGTtgagtttgtgagtgtgttttagcacagaaaGAACTCAATGTTTGTGTCTGTAGTTCATCACCATGGGTGCAATGGGTTCCctgtgattgattgattgatagaaGCTGAACAGCAGAAGCTCCCACAGACTATTCCTAATAGAGGGCGTTTTAAAAGTCAGTGCTTTTTTGACAGTGGAGAAGCATGTCAAATTAGCCAAATTTTAGTCAAGCCTGTCAGGTAGCAGAATGGTCTTATTGGACAAGCCACTCTCATAGACTGTGCTTGAGAGAACCCTGTTTGCTTAGCTTTTTGCTTTTTGGAGGGGTTTATTTGCCTGTTGCTCACAATGTTCACAAAGTTCTTTTCCCATCAAATCAAACCCACtactgaaacaataaaaaaggttGAGTATCTTTTTCCTCTTAGCTGAAACCCCCCCAATCCACAGCCGCCTTTCTTATATCCCATTTTACCTCTGCACAGTGAAGCAAGTCCTGGGACTTTCACTAAATCCTGCACATCTGCACGCTTGGGTCACGGGCCGAAAATGtgaaatgatttttaaaatgttgaatgAAACACACTGATGTTTCTCATACACACCCCCcccaaacatacacacaaacaacctGATTTCTGTTCACTTGTTTCTGTCGGGACATCACTGTTAAAGAGAGGGAACCTTGTGCTAatgggatggagagagagagagagagagagagagaaatggttCAGTGGTTcagtttttgaaaagatttAAAAGACTGGGTCAGGAAACACAGCTGGGTTCactcacatttttgttttttttgcttgttttgttaattttaacAGCTACCATTAATCTACTACCATTAATCAGCATTTTGAGGCTCGCTTTGTGGTGGGCTGTATTTTAGCTGGGGTAACTTTTCCCTCTAAATTTGAAAAGTGATTCTTGAGGCTAGTTGTTGACAATGTTGGCTGATCTGTGAATGGTTTAGGGGGAGGGAGGAAGGTTCTTAAgcattagtttagtttaagtaTTAGGTTATTTACTATACAGTGTGCTCTTTTAGTGGCACAGTTTTCGTTGTCACAGTGTGATGGTACACATTTGGGTAAAGGGGAAACAGGGTTTCTGTGGcaatggaggaggaggatgcaGGTTATCAGAAAAACATGTTAATCAGAATGGCTGTTTGGAACACAAagggaaatcttttttttttttttttttttttttttcttttcaatttaaaataagtcGACTGTTTTATTTGTCCCAATTCCTCCCCCTTCTGCCCCCTTTTGATGCATATACCCCATGATAAAACAGTCTGAGTAGAAATTGTGCCTTATTTGTGTTCTTTTAtatgtccaaaaaaaaatcctgtacgGTGAAAAGCAAGAAACAGGATGAAGAATTGAAGGGAGGGTTTTGGGCAGGgagattaaacaaataaaaccacaAGCATAGAGTAAAACCGATTTGAAAACTCGTCCCATTCTCTCGCTCTGCTGTTGTTGGTGTTCAACCACACCATAATGCCTCCCTTTTCAAATGAAACGTTCAGATGACCAAAAGGCATGTTTCAAACCTGAGACCTGAGAGAGTCCacgacacccccccccccctcccctcttcCCACCCACCCTTCCACCCCAAAACTACTTCTGTGCAACCTTTGTACATAGACTTAAAGTATTCAGTGTTACTGCCATGTTTATGTAGTTAATGGACTCTATGTACTACTACTGTGCTGTATTGGCCATAAGTCTATttcatcattctctctctctttatttggcGCTCCCATCTTTGGTTTTCTCTGCTGACGTTCTTTTTAAGTGTGGAAGAAATTGTGCGATGTGTTCTTGGAGCAGGCCATGGGGTGCGGAGGAttgaaaacactttttgttatttttatttttttggagctTTCTTAGatggggagggagggagggggggaggtGTAAGAGTagaataagttaaaaaaaaggtggATTCTGTAAATATGTGTTTCATTTTATTGAAGCATGTGCAGCATAACCATGAGCTAATGCTGTCTTTTCCCCACTTCATGTATTTAATTGTCAGGACTGTCTGTGTGAGCGCCTGCGTGTggggaggaggatgaagagacATGCTGATgcataaagcaaataaacagatttggataataaaaca

Function

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K17278 PGRMC1_2; membrane-associated progesterone receptor component

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107647 lncRNA upstream 101345 12156315 ~ 12161780 (+) True G79914
TU107636 lncRNA upstream 154021 12108809 ~ 12109104 (+) True G79903
TU107454 lncRNA upstream 186914 12073570 ~ 12076211 (+) False G79761
TU107445 lncRNA upstream 236919 12025586 ~ 12026206 (+) True G79752
XR_002650322.1 lncRNA upstream 265982 11991693 ~ 11997143 (+) False LOC111193192
TU107661 lncRNA downstream 2339 12281845 ~ 12283581 (+) True G79924
TU107798 lncRNA downstream 233496 12513002 ~ 12542649 (+) True G80024
TU107800 lncRNA downstream 243198 12522704 ~ 12523100 (+) True G80026
TU107805 lncRNA downstream 249120 12528626 ~ 12531849 (+) True G80028
TU107802 lncRNA downstream 249456 12528962 ~ 12531849 (+) False G80028
XM_022672716.1 mRNA upstream 1888 12188758 ~ 12261237 (+) True LOC103024200
XM_022672717.1 mRNA upstream 1888 12188760 ~ 12261237 (+) False LOC103024200
XM_022672718.1 mRNA upstream 1888 12188761 ~ 12261237 (+) False LOC103024200
XM_022672732.1 mRNA upstream 88466 12154923 ~ 12174659 (+) True LOC111193190
XM_022672720.1 mRNA upstream 222415 12002794 ~ 12040710 (+) False LOC103021592
XM_022672728.1 mRNA downstream 10891 12290397 ~ 12312938 (+) True LOC103034755
XM_022672730.1 mRNA downstream 10891 12290397 ~ 12312938 (+) False LOC103034755
XM_022672731.1 mRNA downstream 10896 12290402 ~ 12312938 (+) False LOC103034755
XM_022672725.1 mRNA downstream 35588 12315094 ~ 12338375 (+) True jade1
XM_022672724.1 mRNA downstream 35588 12315094 ~ 12338375 (+) False jade1
TU107455 other upstream 186914 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 357740 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 707986 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 1449655 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2708597 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 1646363 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2446421 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 2509096 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 2895489 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 3284481 15563987 ~ 15583331 (+) True G80857

Expression Profile