RNA id: TU107798


Basic Information

Item Value
RNA id TU107798
length 257
lncRNA type sense_over
GC content 0.47
exon number 2
gene id G80024
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12513002 ~ 12542649 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctctcctaaatgGCAGTAAATATCTCTcctagtggcagtaagccgtaacctcgcgggtaatacaatcgacaagcattgtgggaaatgtagtttttggtcaaagaatgcttctgacctatttattatggacactaagattttacaagctctcgcgggccacataaaaggacgtggcgggccacatttggcccgcgggccttgtgtttgacacatgtggtttggagagacatgtcatctgctggtgttgatccactgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107661 lncRNA upstream 229421 12281845 ~ 12283581 (+) True G79924
TU107660 lncRNA upstream 233497 12223277 ~ 12279505 (+) False LOC103044397
TU107647 lncRNA upstream 351222 12156315 ~ 12161780 (+) True G79914
TU107636 lncRNA upstream 403898 12108809 ~ 12109104 (+) True G79903
TU107454 lncRNA upstream 436791 12073570 ~ 12076211 (+) False G79761
TU107829 lncRNA downstream 39151 12581800 ~ 12667992 (+) True G80031
TU107928 lncRNA downstream 279309 12821958 ~ 12823957 (+) True G80114
TU107962 lncRNA downstream 333124 12875773 ~ 12879257 (+) False G80138
TU107964 lncRNA downstream 333124 12875773 ~ 12886581 (+) True G80138
TU107960 lncRNA downstream 341905 12884554 ~ 12886581 (+) False G80138
XM_022672725.1 mRNA upstream 174627 12315094 ~ 12338375 (+) True jade1
XM_022672724.1 mRNA upstream 174627 12315094 ~ 12338375 (+) False jade1
XM_022672728.1 mRNA upstream 200064 12290397 ~ 12312938 (+) True LOC103034755
XM_022672730.1 mRNA upstream 200064 12290397 ~ 12312938 (+) False LOC103034755
XM_022672731.1 mRNA upstream 200064 12290402 ~ 12312938 (+) False LOC103034755
XM_007244578.3 mRNA downstream 22463 12565112 ~ 12579232 (+) True LOC103045432
XM_007244580.3 mRNA downstream 198710 12741359 ~ 12748024 (+) True LOC103046040
XM_015604607.2 mRNA downstream 267018 12809667 ~ 12820803 (+) True LOC103025054
XM_007244586.3 mRNA downstream 428782 12971431 ~ 12986601 (+) True LOC103047786
XM_007244587.3 mRNA downstream 447082 12989731 ~ 13021102 (+) True LOC103021501
TU107455 other upstream 436791 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 607617 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 957863 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 1699532 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 2958474 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 1383220 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 2183278 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 2245953 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 2632346 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 3021338 15563987 ~ 15583331 (+) True G80857

Expression Profile