RNA id: TU107996


Basic Information

Item Value
RNA id TU107996
length 1983
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G80166
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 12955316 ~ 12957340 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gaaatatttaattttttcatgcattgaatataacatataaaagtTAAGCTACAATAGGATTTACTGCCCTTCTGGCCCAATTGTTGAGCTGGAGCCAGCCATGGCCTAATGGTTAGAGACGCTGGTTTGGGACTTTGATTCCCTGAGGCATGTAGTGCACTAAATGCACCTCAGCCTAGGTGCTGACTGTCTCTATTCTCTAGTGAGTGTGTTTTCACAATCACAGATGGGTTACATGTGCCATGGCCATAAAGAATGATTTTGATCTTAATTCTGTGACGTATCACCAGTCTGTATGTTGTAAACCCAACTGGTACTGGTTCCTCCCAgccaatgtatatatatacactgtacatTTACCTGAAACCATTTACCATTTAGGCAGTGTTCTTCTATAACCCACTAAAGCTGATCCcctaaaaaaagtaaagcagTGAATTTCCTTGATTTATGTATCGACAACATAATTTCCATGGAAACAAATCAAACACTAAATCAACTCAATTATAGCCTACAGTTAACAGTAAGCTGAAAGACACAATTGGGTTTATATAATTCTGTAATTGATTTGTCTGaatctatggaagcccatttccacCACTTAAAAAAGGGTCCTTCAGTAAGTGATAATAATGAGATACTCAgtaataattatgagatagtaagtcataaatATGAGGTAATCATTActatgagatagtaagtaataattatgagatagtaagtcattattgagatactaagtcacaATTATGAGACACTATTTCACTATTACCAGATACTttatcataattatgagatactaagtaataCAAAGTAATTATTATGAAATGTTAAGGCATATACTAATTCATTactatgagatagtaagttaaTATTGAAATACTAAATCACAATTATGAGACACTAATTCATTATGAAGAGGAACTACGTCATAATTACGAGATACTAAGTCGTATTTAACAGGTACTGAGTGACAATTATGAGAAACTAAGTCGTATTTATCAGGTACTTAGTGACAATTATGACATACTACATAATTATTATGAAGTAGTAAAGTTAATTATGATATGGTGAGTCATATTTGTCAAAAAGTACATTAttattgagatactaagtcataattatgacttagtataaTTATGCAAAGCCATTATTATGATATAGTAAgtgataattatgagatagtaagtcattattgagatactaagtcgtaTTTAACAGGTACTAAGTGacaattatgagatactaagctATATTAAATCGGGTACTTAGTGACAATTATGAGATTCATTGTCATTATTATGAGGCAGTGAGTTAATTAAGAGATGGTGAGTCATATTAATCAGAAAGTCATTAATGAGTGAatgatactaagtcataattatgagatagtaagtattattattattattattaattactagAAAACCCTTGTTTTTTTGAAGTGATGGAAATGGCCCTACatataaatttactaaaatCAGTGTGTTccctgttgattttttttagttgctcATTCGACAGACTTCTTCTTCATTACATCCCTGCAGAAGGTCAGCATATAGTTTCTTGACCTCCTCATACAGAGGTGAATAGCTGAGGCCTGGCAGAGCCACTGGATTCTCATTCACCCGGAACTGCAGCCTAAAGCCATCGGGGCAGCTCCACAGCGCCGCCATCAGGTTAGCAGCGAAGGGCACGTTCTTGCTGCAGTTAAAAGGGCGGTGAAGGTTTTCAGCGAAGTTGTTGGCATCAAGACTGATTTTGCCCTTGAAGAGGCCCAGGAGGGTCATTAAAGGTATCAGCGTCTCAGCGTGGCCAACCTGCACATTAACCACCTCCGACACGGGCTGACcagacctgagagagagagagagatagagagagagagagatagagaaaaagagagatggagaataATGGTTATAAGTTTCAACTTACAGCAGTGATTAAATGTTAGTATTTCTGCTcaaatataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107964 lncRNA upstream 68735 12875773 ~ 12886581 (+) True G80138
TU107960 lncRNA upstream 68735 12884554 ~ 12886581 (+) False G80138
TU107962 lncRNA upstream 76059 12875773 ~ 12879257 (+) False G80138
TU107928 lncRNA upstream 131359 12821958 ~ 12823957 (+) True G80114
TU107829 lncRNA upstream 287324 12581800 ~ 12667992 (+) True G80031
TU108011 lncRNA downstream 30123 12987463 ~ 12987842 (+) True G80176
TU108022 lncRNA downstream 92455 13049795 ~ 13051000 (+) True G80186
TU108027 lncRNA downstream 133605 13090945 ~ 13094064 (+) True G80189
TU108035 lncRNA downstream 165022 13122362 ~ 13124594 (+) True G80197
TU108043 lncRNA downstream 185745 13143085 ~ 13143493 (+) True G80202
XM_015604607.2 mRNA upstream 134513 12809667 ~ 12820803 (+) True LOC103025054
XM_007244580.3 mRNA upstream 207292 12741359 ~ 12748024 (+) True LOC103046040
XM_007244578.3 mRNA upstream 376084 12565112 ~ 12579232 (+) True LOC103045432
XM_007244576.3 mRNA upstream 406226 12533857 ~ 12549090 (+) True exo1
XM_022672724.1 mRNA upstream 616941 12315094 ~ 12338375 (+) False jade1
XM_007244586.3 mRNA downstream 14091 12971431 ~ 12986601 (+) True LOC103047786
XM_007244587.3 mRNA downstream 32391 12989731 ~ 13021102 (+) True LOC103021501
XM_007244588.3 mRNA downstream 32391 12989731 ~ 13021102 (+) False LOC103021501
XM_022672735.1 mRNA downstream 42130 12999470 ~ 13021102 (+) False LOC103021501
XM_007244591.3 mRNA downstream 98592 13055932 ~ 13062962 (+) True morn2
TU107455 other upstream 879105 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 1049931 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 1400177 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 2141846 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 3400788 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 968529 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 1768587 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 1831262 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 2217655 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 2606647 15563987 ~ 15583331 (+) True G80857

Expression Profile