RNA id: TU108285


Basic Information

Item Value
RNA id TU108285
length 1758
lncRNA type sense_over
GC content 0.40
exon number 4
gene id LOC103027475
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13721901 ~ 13807027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggaaatactccgtagggtagactgtcccatttcagtaGAGCCGCTGCAGCCTACCCATCCTTCAAAGGATGCAGCGCCTGAATTGGGACGCAGATTTTGTACAACAATAAGCAGCAGGTTTTGCAGACGCTGTTGAAGAGTTTTAAGtgatcaatgtttttttctctctttctctctgtctctcagccAGGACTGAACTGGAGGAGCAGGAGAAACAGCTGGCTGACACACAGAAATGCTTCGTGGAACTGACGCTGTTTTTCTCAGTCAAGCCCAAGGCAGGAGAGAAGGAGGTCTCTCCAAACACGCTGTTCTCCGTGTGGCACGAGTTCTCCAGCGATTTTAAAGAGCTgtggaagagagagaacaaacTTCTACTGAAGGAACGATTGAAAGCAGCAGAGGAAACCATCAAACAGGCGAGAGAAAAATCAGCCTACAGCGTCAAACCCAAGCATGCCTCTGGAATGAAAGCCAAACTGGGCCAGAAGATGTGAGGCTCTACAGGCCTGCGCTTCAGGACTCGGGTTCCTGAACAGCACAACTCCACTACAGTAGAAACACACTTTACACCTCAATTCTGTTCCTCTCAGAACTTACTGTACTATCACATTAACCTGACCTGAAATAGCTGCTGAAATAACTGTTCCTACTGCAgtacttatatttatttatcacaaAAAGACAATCAAGCAGAATATAAGCCATATAGCTATAAAACATATCCTCAGACTCTCATTACCCACTGTTTCAGCTTATCACCAACAAATCAGCCGCTTCCTGAATTTGAACAGATTAGGATACACACAGCTGTAACAGATATTAAGGTTTGATGAAGACAACAatatcttaaagaaaaaaacaaacaatattattatggATTGGAATATAATACATATCAAAACCTGTAGTACTCCTAAATGAGAGGACAAGAACCTGGCAATACAATATTGTtgctctgtttggcttgtaagcgctgcatcgctGCTAGGTTACTTGTAATAcacggagagcttcggttacagtgcattaccggctgataacggcactagtagaatgcctctcagccaatcacattgcagggttggaactaactgtggtataatatagaataaaacatttacatttgtcCTCACTGCAATTTCAGTGTTAGAAGTGTTGAAAGAAATATCTAAACAAGCCTGATGTTCTTCACAAGCACAGCACTGATTGACTGCCCTTTGCATTGTGTGAACATTTCATGATAACTAGTTTTTGTTAACAGTGATGTTTCATTTTTAGACTTTTCTTTACCAAGCATGGGTTATATTTGACTATTTGACCTACCAGCCAGTGTGTTCTCATaccagttttctttatttgttaacATCTGTAACAAACAGAAAATCTTAAATAACTTAGAATTCAGGTATCAACCTGCATAAATCCTGAATATCGGTAAACCTTGAGTGTATATTAATAAGCAGGACCTCCTCGTACTGTAGTGCCATCCAGAGTCTTCGTATAAGGACATCATATGTAATCACTCCTTATGTAATACTTACTACTTCTTATTTCGTGTCTCTTTTTACCCAGCTTCGTATTAAGGCGAGtctttgattcattttaataGCGAGCATCTGCAGACGATTACGCCCAACCATAAAAGGCTGGCAGGCGTTTTGTTTGACTTTGGTCTGTGATTCCTCATGAGActgtataattgtattttttaaattaaactatatttattttttaaataaacaattctAGGTTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108276 lncRNA upstream 61756 13687025 ~ 13737100 (+) False G80388
TU108274 lncRNA upstream 61756 13734025 ~ 13737100 (+) True G80388
TU108277 lncRNA upstream 61756 13734025 ~ 13737100 (+) False G80388
TU108271 lncRNA upstream 137061 13661400 ~ 13661795 (+) True G80386
TU108243 lncRNA upstream 308642 13463375 ~ 13490214 (+) True G80359
TU108419 lncRNA downstream 238358 14045379 ~ 14046945 (+) True G80494
TU108426 lncRNA downstream 250400 14057421 ~ 14063596 (+) True G80500
TU108430 lncRNA downstream 250400 14057421 ~ 14060263 (+) False G80500
TU108526 lncRNA downstream 706477 14513498 ~ 14515824 (+) False LOC103028846
TU108539 lncRNA downstream 766561 14573582 ~ 14574902 (+) True G80578
XM_022672746.1 mRNA upstream 79238 13484566 ~ 13719618 (+) True LOC103026792
XM_022672475.1 mRNA upstream 401212 13274588 ~ 13397644 (+) True LOC103027186
XM_007244596.3 mRNA upstream 530024 13237205 ~ 13268832 (+) True LOC103024106
XM_022672745.1 mRNA upstream 565153 13207448 ~ 13233703 (+) True LOC103026899
XM_007244602.3 mRNA downstream 118857 13925878 ~ 13947320 (+) False LOC103026193
XM_007244601.3 mRNA downstream 283435 14090456 ~ 14102426 (+) True zmpste24
XM_007244600.3 mRNA downstream 300598 14107619 ~ 14110827 (+) True LOC103025466
XM_007244599.3 mRNA downstream 307045 14114066 ~ 14117650 (+) True rpl13a
XM_007244597.3 mRNA downstream 482227 14289248 ~ 14361236 (+) True htr1d
TU107455 other upstream 1722645 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 1893471 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 2243717 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 2985386 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 4244328 9495449 ~ 9554528 (+) False spata17
TU108374 other downstream 118848 13925869 ~ 13952198 (+) True LOC103026193
TU108641 other downstream 918906 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 981581 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 1367974 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 1756966 15563987 ~ 15583331 (+) True G80857

Expression Profile