RNA id: TU108374


Basic Information

Item Value
RNA id TU108374
length 4614
RNA type TUCP
GC content 0.42
exon number 11
gene id LOC103026193
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 13925869 ~ 13952198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAAGCGAGAATGGAAAAGATGAGAGAGGAGCAGGGCGGTAATTTAGGCGCATATCTGTTATAAATCTTGCTCTGTTTCTGTGACAGTGccgtttaaatgtgtttaaccCGCTGGATGAGCAGCAGAAAGGTGTATTTTAGCCTCTAGCAGGACGGCTAAGGTTATTTGTGGCTGTGAAGAGGAGCTGCTGAAGTAACTGGACGGAGGAACAGGAGAGGAGAAAGATGGTTTCGTGGATCGTGTCTCGGGTTGTTGTCCTTGTGTTCGGGACACTCTATCCAGCGTACTACTCCTACAAAGCGGTCAGGACCAAGAATGTAAAAGAATACGTGCGATGGATGATGTATTGGATCGTGTTTGCTCTTTATACTGTAGTAGAGACCATCACAGACCTTTCCTTGGCATGGTTCCCGTTGTACTACGAGCTGAAAGTGGCTTTTGTTATCTGGCTGCTGTCGCCGTACACCCGAGGAGCCAGTCTGATATACAGAAAGTTCCTGCACCCCCTGCTGGCCTCCCGAGAACAGgagatAGATGATTACATCGTCCAGGCCAAAGAAAGAAGTTATGAGACGATGGTGAACTTCGGCAGGCAAGGCCTCACTAtcgctgctactgctgctgtcaCTGCTGCTGTtaagACTAACCACATGTAACGGTCTCTGTACCTGGCTAAAGGTGGTGGTGGAGCTGCAGGGACAGGGAGCCATTAGCGAGCGTCTGAGGAGCTTCAGTATTCCTGACATTTCACAGATCCCTTCTGACCAATCAGCTTTCGCTAGATCTCTCCAGCGGGCCAATCAGAGCACAGATCCCAGTATTGAGGGCTCAGAGTATTACCCATATCAGGAAGAGGACGGGCATGAAGAGGAAGTAGATGGAGCATTTTTAGAGGATGAATCATCTCTGCCTAAAGGTCTGCGCAGAACACAGAGCGTGAAGATCACCCGTTCCAAAGCTGTGCGCAAAGAGcCTCGTTACGGCTCGTTGAAGATTAAAACCAGAaggaggcccatgatcactacCAGCACTTTTGAACAGCCCTGATCAGCATCATAGAGGAGCCTCTGATTGGACAGCCTGCTCATCCTGTACCATCCTCTAGTGAAGCCTCCATTCCTACAGCCTCCATCATCCTGTAACACACTGGAGCTTGTTACAGTATGAACAGCCTTCATCATACCATAATACACACCACTGAAGTCTTTACACAAGCAGCCCCGGCTGTTCTGTTACAAGCACTAAAGAGCCTCGGGATGCTCTGGCCATCTTGTAACTATGTGCATTACAGGAGCCTCAACAGAAAAGAGTATCAACATTTGTCATCATGCTGTAATACACTGCTCTGCCTGAATCCGGCTTCCATGCTGTACCATCTTTGAGGGGAGCATTTGCACGCACAGTCTTGGTCATCATGTAGCAGAACCCAGGATGCTCTTGCTTTGGACTTGAACAGACCGGGTCATTTTGTAATGTTGTTGCATTCCAAACCAAGGAGGGGGCCTTCGCAACCAGCCTTAATTATATTgtaacacacgcacacacaagcTTCTGTATAACCAGCCCTGGCCATCCTGTTACACACCAGAAATGTCTCTGTATGAACAACCCTTGTCAACCTGTAACACATAGTACATCAGCCTCTCAATGAAAAGCCCTGGCCATCCTGTAACACATTCACTAGACCCTTTAGAGCTTTGATCAACCTTGGTCATCTTGTTACACATCATGGAAGCCTCTGAATGAGCAACGGCGGTCATCCTGTaatgcaaacacacactaaaatccTCTGTATGATGACCCTGGTAATCTGTAACATGCACATACACTCAAAAGACTCTGTATAATGAGCCTGGTAATCTGTGACATGCAAATGCACACTCAAAAGACTCTGTTTAATCAACCTTGGTCATCCTGTTCCACATCAGAGAAGCCTTTGTATGAACAACTGTGGTCATCCTGTAATGCAAACACGCACTAAAAGCCTCTGTATGATAACCCTGGTAATCTGTAACATGCACCTACACACTCAAAAGACTCTGTAGGATGACCCTAGTAATCTGTGGCATGAATACACACCCAAAAGGTAATAGCACTGTTCTGCCTGAACTCTGCTTCCAATCTGTACCATCCTTAAGAAGAGCATTTGTAAGCACCGTCTTGGTCATCATGTAGCAGAACCCAGGATGCTCATGCTTTGTATTTGAACAGATTGGGTCAGCCTGTTATGTTGTTGCATTCCAAACCAAGAAGGGGGCCTTTGCAACCAGCCTTTATCATCTTGTAACACGCACACACAAGTAATCTGTGGCATGAACACATACTCAAGACTCTGTTTGATGCCCCCTGGTAATCTGTAACATGCACACATACTCAAAAAACTTTGTATGATGACCACAGTAATCTGTAACATGCAGATCATAGAAGCCTCTGTATGAACAACTGTGGTCATCCTGTaatgcaaacacacactaaagGCCCCTGTATGATGCACCCTGGCAATCTGTAACATGCACACATACTCAAAAGGCTGTATGATGAtttatcagagaaCAGAACAGACATAGATACAGTGTCATCAAAAGCTATTTGCATACtaatagcactttttttttggagaatCTTTAGCCTGTAGCTGAATCTTAAACTGTGCCCTTATCACTGTTCCCTACATTCAAAAATACAGCGCTCAGCATTTTTCCTCAGAGAACTTGCACTGCCATGGTGGATTATGAGTGTTTCCTCATTCACCCAGTGTACACTATTTGTTCTTTACTAGAGATGTTACATTTGAGGAAATGGGTCACTGGTTGATATACAGTATGAATGGAAATTTATATATCCTAATGCTTAATATGGCATCTATTTCTGAGTATAATCCTACCATTCAACAAAAAGAGCAAGCTAGTTACCCAACCAACTATTCAGAAGGCTTTTTGTCGTATTttttcagtgatttaaaatatgttttggaaAGATAATTTAAAGtccctgaaaagaaaaaaatttgtactgaattttttgcactacaaggcacacttaaaatccttaatcctttattttcccaaaaatcgtcaattggccttataatccagtgtgccttataatccggtgctctttatgtatgaattctaccagtcaggttgtaaggagctgttaagccactccactgaagtaacTTTACAGAGAacttttcagtttagttcttcagcagcattagcattagccgctaaccgtgctaaagtcaagctctttggctgttcagaggtgagtattaAAGGCCTGTAGCTAACTCCAAATAGCACTGCtcgagcagcattagcattaactagtggttagccgctaatactaatgctaatgctccagcttcagtggaaatctggaagtATAggctaactgtaaataaactgaagcactttactgaccaaaatgaacagttttcaggagagaaatctgcatAGATTAACATACAGTGCTGGTTTGACGTgtcaaactttttatttatttattacagtattgcttacttagcttagctttacagataacaccacccagcagcaagacctgctgaattagaaggaaaacatggcaacactccTGTTCCTCACTATAGTCGCataaagtgtgccttataatctggtgcaccttatgaataataatataaaaacaaaacagaaaacagatgtttattgattttaatctgttgtgccttatagtgtgaaaaatacgatatttaggtttaaatacaaaacacaaagcAGAGATACACTATAATGCTTGTCTGAATTTTTGGGTTCAGTAATGTGAGGCTTGGATGAAACTGGCTCAGCCATAGAATCCCATTTCATGAAAATAGACGCTGCTTGATGGGAAATATTGTAGGATTGTTACAGTGTATCACTGCAGAATGGCCGGAGTCCCATAATAGTGCCCTATGTAGCGAATAGGGTAAAGTTTCAGTCACAGAAAGGAAGCAAGTGAGTTACAACAACTTCCACAAACCTAACCTGTAGCCTATAAATGGTTTGTATGATAGTGTAGATAAATACTACAGAATTACGACGACCCAAAGACTTTATGTGTCTTTATACGGTGTGTGTTTCAGACTTCATGGTCTTTGTTGTTCCATGCATTGTGATGTGAGTTAATATAACAGCTCATATCATATAAAACACTAATCAATAACTTGGGTTCAGTTAGGAAGGGGCCTGCTAACACACCAGCGCTGTTTTCTATTACTGATGCACTGTCAGCTAGCTTGAGCTTCTGGAAGACTGAGGGCTGAGGTCTGTTgggcaaatgtgtgtgtgactttgtgtgtgtgtgtgtgtatgagagagagaaatatagtgAGAATGAGGTTCTCTTGTGTCTCTtgtttacacattaaatattttctaagCCTTGTAATCTTTCAGCTTTATTTCCAGATCCTCTTTTCAACGTCTTACTCTAGTTTGTGGAAATTCCATCTCCAAATCTCCAAATCCACTCTTCTGCATGAATGTAGAGGCTGggttttaaaatatactaaatgcagtgtttttgctttgtgtgtgttttttttttttcattttcgtATGTAGCGTTTAATTGAATTcatcattaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108285 lncRNA upstream 118848 13798856 ~ 13807021 (+) False LOC103027475
TU108276 lncRNA upstream 188769 13687025 ~ 13737100 (+) False G80388
TU108274 lncRNA upstream 188769 13734025 ~ 13737100 (+) True G80388
TU108277 lncRNA upstream 188769 13734025 ~ 13737100 (+) False G80388
TU108271 lncRNA upstream 264074 13661400 ~ 13661795 (+) True G80386
TU108419 lncRNA downstream 93181 14045379 ~ 14046945 (+) True G80494
TU108426 lncRNA downstream 105223 14057421 ~ 14063596 (+) True G80500
TU108430 lncRNA downstream 105223 14057421 ~ 14060263 (+) False G80500
TU108526 lncRNA downstream 561300 14513498 ~ 14515824 (+) False LOC103028846
TU108539 lncRNA downstream 621384 14573582 ~ 14574902 (+) True G80578
XM_022672748.1 mRNA upstream 118842 13721901 ~ 13807027 (+) True LOC103027475
XM_022672746.1 mRNA upstream 206251 13484566 ~ 13719618 (+) True LOC103026792
XM_022672475.1 mRNA upstream 528225 13274588 ~ 13397644 (+) True LOC103027186
XM_007244596.3 mRNA upstream 657037 13237205 ~ 13268832 (+) True LOC103024106
XM_022672745.1 mRNA upstream 692166 13207448 ~ 13233703 (+) True LOC103026899
XM_007244601.3 mRNA downstream 138258 14090456 ~ 14102426 (+) True zmpste24
XM_007244600.3 mRNA downstream 155421 14107619 ~ 14110827 (+) True LOC103025466
XM_007244599.3 mRNA downstream 161868 14114066 ~ 14117650 (+) True rpl13a
XM_007244597.3 mRNA downstream 337050 14289248 ~ 14361236 (+) True htr1d
XM_022672758.1 mRNA downstream 498923 14451121 ~ 14478899 (+) True LOC103027082
TU107455 other upstream 1849658 12064844 ~ 12076211 (+) True G79761
TU107406 other upstream 2020484 11901095 ~ 11905385 (+) True G79717
TU107323 other upstream 2370730 11554682 ~ 11555139 (+) True G79654
TU107028 other upstream 3112399 10807371 ~ 10813470 (+) False fam98a
XR_002650310.1 other upstream 4371341 9495449 ~ 9554528 (+) False spata17
TU108641 other downstream 773729 14725927 ~ 14728799 (+) True G80648
TU108651 other downstream 836404 14788602 ~ 14801837 (+) False LOC111193140
TU108802 other downstream 1222797 15174995 ~ 15181398 (+) True LOC111193203
TU108900 other downstream 1611789 15563987 ~ 15583331 (+) True G80857
TU109871 other downstream 4507932 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile