RNA id: TU108911


Basic Information

Item Value
RNA id TU108911
length 391
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G80868
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15631168 ~ 15631558 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGGTTGGGTCCAGGTCATGGTAAAAGTCTCTCGCTGCATAACCGAAACTGTGGAACTTCTTGTCTGGAGTCAGAAGAATAGTGGTCGGCGTTTTCTGATTGGACACTCCTGGATCTCCGCCCTCCCAGCGCCTAGCAACCAGAGCACATTAACTATCAGTGTAGTGCATGACTTTAAATACAACTGATACAGCCAAATACATGCCTACAATACCAGGTGTGGGCTAAAGAAccacatgtataaatgtatctGGCCTCccctttaaataatttaaaattccACATTTCTCCACCtattgctgatacagatgtgcaaattgGCACACACATAGCTTTTCTAGTTCCTGTAAAGCACAAAGTATAAAGCTGTGGCACAATGTTTAATTGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108910 lncRNA upstream 7049 15623839 ~ 15624119 (+) True G80867
TU108907 lncRNA upstream 10386 15598679 ~ 15620782 (+) True G80864
TU108813 lncRNA upstream 371821 15254414 ~ 15259347 (+) True G80787
TU108803 lncRNA upstream 427381 15177273 ~ 15203787 (+) False LOC111193203
TU108807 lncRNA upstream 449770 15174995 ~ 15181398 (+) False LOC111193203
TU108912 lncRNA downstream 33188 15664746 ~ 15664954 (+) True G80869
TU108929 lncRNA downstream 78027 15709585 ~ 15711163 (+) True G80881
TU108936 lncRNA downstream 88013 15719571 ~ 15721009 (+) True G80887
XR_002650337.1 lncRNA downstream 95036 15726594 ~ 15728992 (+) False LOC111193205
TU108938 lncRNA downstream 95082 15726640 ~ 15729262 (+) True LOC111193205
XM_022672782.1 mRNA upstream 88882 15507380 ~ 15542286 (+) True LOC111193204
XM_022672773.1 mRNA upstream 478687 15024469 ~ 15152481 (+) True wdpcp
XM_022672774.1 mRNA upstream 478687 15024470 ~ 15152481 (+) False wdpcp
XM_007244624.2 mRNA upstream 680089 14892427 ~ 14951079 (+) True peli1
XM_007244626.3 mRNA upstream 751462 14836482 ~ 14879706 (+) True LOC103032735
XM_022672784.1 mRNA downstream 50815 15682373 ~ 15704118 (+) False eno4
XM_007244644.3 mRNA downstream 50816 15682374 ~ 15704118 (+) True eno4
XM_007244645.3 mRNA downstream 50816 15682374 ~ 15704118 (+) False eno4
XM_022672790.1 mRNA downstream 232925 15864483 ~ 15891088 (+) False pla2g4f
XM_022672791.1 mRNA downstream 232926 15864484 ~ 15891088 (+) True pla2g4f
TU108900 other upstream 47837 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 449770 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 829331 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 902369 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 1678970 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 2828572 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 2828572 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 2828572 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 2828572 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 2828572 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile