RNA id: TU108929


Basic Information

Item Value
RNA id TU108929
length 985
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G80881
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15709585 ~ 15711163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCGAGATCACGGACGCTCGCGTGCGGCAACAATGCCGATGGTCTGTTCGCTTTTCAGATGAAAAGCGACAGTGCTAAACGATCATGAGAATCCTAAAGGTTGTTATTCATGCTTCCTTTTTTATTCTAAGAAATCTAATTACtgttttctgtttacttttttaatgtttattttacttaaataaaaaaatagcattcaGCGAGACTTTAAAGAGAGACTTTTAGTAGAGGAAAAGTGAATCTAGACagattttagtagtcgagtctaaatcaagaccaagacttttagtagtctagTCCGAGTCAaaatcaagacttttagtagtcgagtctgaatcaaacccaagacttttagtagtcgagtctgaatcaaacccaagacttttagtagtcgagtccgaatcaaaccaaatatttttagtagtcgagtctgaaaCAAACcgaagacttttagtagttgtctgaatcaaaaccaagacttagtagtcaagtctgaaTCAGGAACaagacttgtttttttctggccaGCAGATGGTATGTAAATGCTAATATATGAAGAGCACTGAGTGAGAAGTGGATTAACTAAACACGGCCAGGCGATGCCACTGAGCAGAACGCCGTGCTGTTTACGCTGATTACTGAaggtttagtttcagtttctaaATAACATTACCATAGAAAAACACGAGAGGCGGATGGTCTTGAACAATTCCCAAATTCTCAAGACCACCTCTCCCTGAGACAAGGCCCCCGAGACGAGCCTGAGACCTCTCATTTATGGTCTTGAGACAGAGACCGGACTAGAGTACTACAACACACAGGACTAGAATATTACTAGGACTAGtagctgagctaacttagccttagcaattttttgtttacaattttgtttataaCTGGATTgccactgctaaggtaaatttcTAACTAGTATTGCACTGTGCAATATtaattgcaataataatattgcaagtgaatttatgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108912 lncRNA upstream 44631 15664746 ~ 15664954 (+) True G80869
TU108911 lncRNA upstream 78027 15631168 ~ 15631558 (+) True G80868
TU108910 lncRNA upstream 85466 15623839 ~ 15624119 (+) True G80867
TU108907 lncRNA upstream 88803 15598679 ~ 15620782 (+) True G80864
TU108813 lncRNA upstream 450238 15254414 ~ 15259347 (+) True G80787
TU108936 lncRNA downstream 8408 15719571 ~ 15721009 (+) True G80887
XR_002650337.1 lncRNA downstream 15431 15726594 ~ 15728992 (+) False LOC111193205
TU108938 lncRNA downstream 15477 15726640 ~ 15729262 (+) True LOC111193205
TU109001 lncRNA downstream 250344 15961507 ~ 15963105 (+) True G80942
XR_002650338.1 lncRNA downstream 312662 16023825 ~ 16032864 (+) True LOC111193206
XM_022672784.1 mRNA upstream 5467 15682373 ~ 15704118 (+) False eno4
XM_007244644.3 mRNA upstream 5467 15682374 ~ 15704118 (+) True eno4
XM_007244645.3 mRNA upstream 5467 15682374 ~ 15704118 (+) False eno4
XM_022672782.1 mRNA upstream 167299 15507380 ~ 15542286 (+) True LOC111193204
XM_022672773.1 mRNA upstream 557104 15024469 ~ 15152481 (+) True wdpcp
XM_022672790.1 mRNA downstream 153320 15864483 ~ 15891088 (+) False pla2g4f
XM_022672791.1 mRNA downstream 153321 15864484 ~ 15891088 (+) True pla2g4f
XM_022672792.1 mRNA downstream 153321 15864484 ~ 15891088 (+) False pla2g4f
XM_022672793.1 mRNA downstream 157069 15868232 ~ 15891088 (+) False pla2g4f
XM_007244649.2 mRNA downstream 186361 15897524 ~ 15920726 (+) True kcnk18
TU108900 other upstream 126254 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 528187 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 907748 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 980786 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 1757387 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 2748967 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 2748967 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 2748967 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 2748967 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 2748967 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile