RNA id: XR_002650337.1


Basic Information

Item Value
RNA id XR_002650337.1
length 755
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC111193205
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15726594 ~ 15729262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtacgtgtgtgtgtgtgtgtgtgtgtgtatataccaGTAAAGCGCAGGTCTTTGGCCTCAGTTTCTGCCTTGGTACATTTCTCCtgtatctctctcctctcctcctccagaAGCTCCGCCTTCTTCTCTAATAATGACAGCTGTTTCCTCCAATCAGAAGCTTGCAGTTCATCCTCCAAACGCTTTATCTATAGAagaatattacacacacatacacattatatacacatacatacacacaaacacacacatacacacacaaacacacacacacacacacacacatacacacacatacaaacaaacattatatgggtatacatacacacatacacattcccAAATCACAGTGTGTCAGATGTGTGTTTAAACTACATTACTGCATTATTAAAGGATTTCAAATTAACTCCGGCATCCAGCCAATCCCCCTAAAGAaataattacacacacagacccttTCACACTCAGCCTTTGTGTTGGgatgtatgtaagtgtgtgtgtatttagtaAAGTGCGGGTTGTCATGTTTGATGGTTGtttatatacagtATATTGATAATACAATGCTGTGTTATAatctgttgcttttttaaaggtATTACACTTATTTAtcgcaagaaaaagtatgtaaccctttggaatttcatggttttctgcataaattttacataaaatgtgatctgatctttATACAAGTTAAGGGTATCGACAAGTATGATGtgcttaaaataattacatccaaaaataaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108936 lncRNA upstream 5585 15719571 ~ 15721009 (+) True G80887
TU108929 lncRNA upstream 15431 15709585 ~ 15711163 (+) True G80881
TU108912 lncRNA upstream 61640 15664746 ~ 15664954 (+) True G80869
TU108911 lncRNA upstream 95036 15631168 ~ 15631558 (+) True G80868
TU108910 lncRNA upstream 102475 15623839 ~ 15624119 (+) True G80867
TU109001 lncRNA downstream 232515 15961507 ~ 15963105 (+) True G80942
XR_002650338.1 lncRNA downstream 294833 16023825 ~ 16032864 (+) True LOC111193206
TU109073 lncRNA downstream 352326 16081318 ~ 16086958 (+) True G80998
TU109074 lncRNA downstream 352326 16081318 ~ 16086958 (+) False G80998
TU109095 lncRNA downstream 435488 16164480 ~ 16170976 (+) True G81011
XM_022672784.1 mRNA upstream 22476 15682373 ~ 15704118 (+) False eno4
XM_007244644.3 mRNA upstream 22476 15682374 ~ 15704118 (+) True eno4
XM_007244645.3 mRNA upstream 22476 15682374 ~ 15704118 (+) False eno4
XM_022672782.1 mRNA upstream 184308 15507380 ~ 15542286 (+) True LOC111193204
XM_022672774.1 mRNA upstream 574113 15024470 ~ 15152481 (+) False wdpcp
XM_022672790.1 mRNA downstream 135491 15864483 ~ 15891088 (+) False pla2g4f
XM_022672791.1 mRNA downstream 135492 15864484 ~ 15891088 (+) True pla2g4f
XM_022672792.1 mRNA downstream 135492 15864484 ~ 15891088 (+) False pla2g4f
XM_022672793.1 mRNA downstream 139240 15868232 ~ 15891088 (+) False pla2g4f
XM_007244649.2 mRNA downstream 168532 15897524 ~ 15920726 (+) True kcnk18
TU108900 other upstream 143263 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 545196 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 924757 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 997795 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 1774396 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 2731138 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 2731138 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 2731138 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 2731138 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 2731138 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile