RNA id: TU109074


Basic Information

Item Value
RNA id TU109074
length 499
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G80998
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16081318 ~ 16086958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGAAACGCCAGGTAgagaggagtgacgcgagccgagttaaaaatacagGCAGGTTTATTATAAGAAAGGTTAACAGGTTCTgctaacagaaaacaaacaataatctcaCCGATGACCAGAGACGTAGTCAAAGATACAGTCCAAGTTCTAAACCGGAAAACAGTCCAACCATATACCAAATCCAacaagggcaaaacaaaagacataaaccgaaAATCCAAACACAGagtcgtaacgagaaggcaaaaacagtAATCCAGAAAACGCTTAGTACGCAACATGAGTTGgcaatacctcgcggtgtttcCTTACAAATGGATGCCTTAAATACAGAATCTAGATAAGAATGAACCGGAAGTAATTTAGTAaacaggtgaatcagagcgtcggagcgtaacgtgattgggtGAATGTGAAGGGTTATTATTGATGTCATAATCtggggaattctgggaaatagagtccggtagtgtggaaggagagccAGGCTGCGTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650338.1 lncRNA upstream 48454 16023825 ~ 16032864 (+) True LOC111193206
TU109001 lncRNA upstream 118213 15961507 ~ 15963105 (+) True G80942
TU108938 lncRNA upstream 352056 15726640 ~ 15729262 (+) True LOC111193205
XR_002650337.1 lncRNA upstream 352326 15726594 ~ 15728992 (+) False LOC111193205
TU108936 lncRNA upstream 360309 15719571 ~ 15721009 (+) True G80887
TU109095 lncRNA downstream 77522 16164480 ~ 16170976 (+) True G81011
TU109101 lncRNA downstream 180349 16267307 ~ 16267608 (+) True G81017
TU109102 lncRNA downstream 182115 16269073 ~ 16273199 (+) True G81018
TU109145 lncRNA downstream 305344 16392302 ~ 16395703 (+) True G81048
TU109176 lncRNA downstream 305344 16392302 ~ 16395703 (+) False G81048
XM_007244652.3 mRNA upstream 133324 15939403 ~ 15947994 (+) True LOC103040417
XM_007244649.2 mRNA upstream 160592 15897524 ~ 15920726 (+) True kcnk18
XM_022672791.1 mRNA upstream 190230 15864484 ~ 15891088 (+) True pla2g4f
XM_022672478.1 mRNA downstream 339567 16426525 ~ 16440795 (+) True LOC111193130
XM_015604620.2 mRNA downstream 376943 16463901 ~ 16467758 (+) True dnal1
XM_007244667.3 mRNA downstream 377154 16464112 ~ 16467758 (+) False dnal1
XM_007244665.3 mRNA downstream 384897 16471855 ~ 16486398 (+) True tedc1
XM_007244668.3 mRNA downstream 431258 16518216 ~ 16539460 (+) True tmem121
TU108900 other upstream 497987 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 899920 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 1279481 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 1352519 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 2129120 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 2373172 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 2373172 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 2373172 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 2373172 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 2373172 18460130 ~ 18464096 (+) False LOC103035760