RNA id: TU109287


Basic Information

Item Value
RNA id TU109287
length 3028
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G81124
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16678648 ~ 16681932 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACCCAAACAGAAAAAGTGACTGTGCAGCAAAATAATCATTCAGAAATCCCCCTCCACCGTAAGGTATCAGCGTTTACATCATCTCTACCAGTACAGATCACATAGTGCAGTCCAGCATGATCAAATATGAGGCATGcagttaatataatattataataataataatttactttaacaGTCTGTACACACTATTTACTGGTGCTAATCAACTTCgattacaaaattattttttattttattattcaattattagATTATAATCCATCTGTAACAGCACCAAACTAAACACACTGCAGAGAGAATCACTGCAGACTAATCAATTGATTaatcaactaccaaaataattatCAGCTGCCGTCCTGTTATCTAGATGAAAATATGCAAAACCAAATTCAAttcattacttttatatttgaaCACAGCAAGTCaccaaaatatatttacagtgataaataaataaaaacaagaaaataaaaaataaataccgTAACAGAGAAAACAAGGCAACCCATCATATAACGCCCACAAAATGCTTCAAAACTGAAGTAATGCATGTTATTTTAAAGACAgactgtaaattatttatatatgtagatTACTacatacacactgtaaaaatagaAATGATGCTTACACTGCACATGAACAGAAAAGACAATTCCTTTATATAGTGTCTTACtttatattcatataaaaatatgttctgAATGTTCATGCAGTATatgtacacatgtgtaacagacTTATTGTACATTGTTGAAATTGGAATTGTGTCACATCCCAACGTTCTGGACTTTCTTTATTAGTGAGAAACTGACTCTAACTAAAGCTGCCCCAATCAGATCACTTAATTCCTGGTGTTAAATTAacagatctgtgtgttttgtatgcAGCAATCTCATTAGTTCTTTAGCTTCTCCACATCCTGCAGCTTCATCATACTTTGTATCATAcgtattatatgtatatatgtaaataaacttttattttcatcTCTTTCTTAGTTTAAGAACTGAAATTATAGAAATCCACGCTGATATAGTACATGAAAAACAGCACAATCAATGATAAcatgatatcatgatattttttctgtgtaaacAAATGTCATAAATCAGACTTTGAATCAGgcttaaaattatgattttaacaCAGTGTAGTGTAAAGTATAATCACACGTAAACATAACAATACATTACTCTTGGCAccgtaacccagAAAAACAGCCACACCCAGAAGGACATTTTAGAATTGTATGCTCTTAagaaatatttattgagctacacatacagaagtataACGCCAGACGTCTCAGAATGAAGTTGCAGAAGTTCCAAATGTTCCTCCTGTGATAATCTATTCCATGCCgctccaatattctcacacagttcttGCAGATTGTGAGGTaggggtggagtgttgataAAGCCTCCAATAGAAACGCATCCCACCCATTTTCTATAATTATGGATAGGTCTGGAGATGCAGCTCGACATGAATAGTATCTGCAGTGTCTTCAAGACTTAAAGCTCTTAATAcgacagcagcagtgtgtggacgagtattgtcctgttggaaaagAGCAccggttgcaggacctcattaatgtaAAGTTGGGCTTTTAAAAATGTGGTATTGTACCAAAGTTCACCCCACACAATGACACCAGACCTTTTGTGTGGGCTGGCGTACAGTTGTTGTAATGGTCTGTGTGCATGTAAGTCCTATGCTGTGCAGCTGTCTGCCAACGGTGCTGGCACAAACAGGATGAACCATGGAGGTCTTCACTTCTTGCTGAATGTCTGTAATCCTACAGTTGGATCACTCGGCACATGTCATGCACACGGCCAGTTCTAGCTCTCTGGGGTTGGTGTGGATCTCGCTGATCCTCCCTGATGTTGCTGCTGCACCTATTTTGGGGTTCTGTGTCTAAAGGCCAACTTATACCTCTGTCATATGTCGTAGCGCATCTCTCTGGTAATGTAACCACGAGTCACGTGACGTAGAGAGCTCGCAGGGGCTTTTTAAAAATTTGCCTTTaccacattctgtggtaaataaataagtccagaacaaataaatatgttcaacaACTCCAAATCAAGTCTGCTCGCGTTCTCTGCTGCTGTGCGGTCAGTtcattagcttaaagctagcattGTTCTAATTACGACTCTTAAATGATCTTGAAATttgaggatccagtgatgtttagGTAAACAAAACCCCAAACATGGGTATAAACAACATGCtgccgactacaaaatgacgacaTGACTGCAGTGGTCTATATGCCAATAAGACCAACCCTTTGACCTATGACCCCTCTGGAAGTCTTCCAGCTGTTGGAAATGCTTTAGAAATCTTCTCTGAGGACTACACGGCACTAGCACTTGCAACGGAGCCCACCTACATAGATACAGAAATAAGCCCCGCCCTGCTTAGGTCACATGCACTGCCGAGCGTGAAACTTTAATGAGCCACATTGTCTCACAATGTCAAGCCCACACATGAAATTTTATTCCTTTATGCTGATTTCTTCTGGGTGCAGATGTTTTTAACGGTGAGTCAAgtttagaatattttatgtttataaaatattttataaagatTACAGCAGTGATCCATTTATAGCAAATGTAACCAGGTAGAACTCCATGGACTACAAGTAGAGCTGATAAATGTACACTATGTTCTTTACATTCTTCTGTGTGCGTGTATTTTACAGCGTACTCCACAGAACACCTGTAACGGTAATTTACACTTTTATACAGAACTTTAATAAACCTACGTTCTCTTGGTCTGagaggtgagagtgagagactgTGGGGGTTCCCCCTGTGTTCGAGTCTGTAGAGAGTTGTTGCTCCTCGTGTATACAAGGTTTCTGCGTTAACTCCTACTTGATGTTTTTGAGCAGAGAGGTGCGAGCGTTCACCACAGCTTTAAAAGCGTCTTCGCTGCCTGGAGCCACGCACTTATCCGGGTGCAGCAGAACAGCCAACTTCCTGTATGCCTTGTTGACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109219 lncRNA upstream 16032 16569003 ~ 16662616 (+) False G81074
TU109222 lncRNA upstream 16032 16569003 ~ 16662616 (+) False G81074
TU109220 lncRNA upstream 24090 16569003 ~ 16654558 (+) True G81074
TU109267 lncRNA upstream 57226 16619583 ~ 16621422 (+) True G81106
TU109262 lncRNA upstream 60524 16617687 ~ 16618124 (+) True G81105
TU109405 lncRNA downstream 35063 16716995 ~ 16719435 (+) True G81190
TU109415 lncRNA downstream 47888 16729820 ~ 16730174 (+) True G81197
TU109443 lncRNA downstream 158292 16840224 ~ 16845728 (+) True G81220
TU109449 lncRNA downstream 182179 16864111 ~ 16864542 (+) True G81224
TU109471 lncRNA downstream 297485 16979417 ~ 16982929 (+) True G81243
XM_007244673.3 mRNA upstream 70191 16594547 ~ 16608457 (+) True ect2l
XM_022672820.1 mRNA upstream 70191 16594552 ~ 16608457 (+) False ect2l
XM_022672819.1 mRNA upstream 70191 16594937 ~ 16608457 (+) False ect2l
XM_022672817.1 mRNA upstream 85075 16586187 ~ 16593573 (+) True ccdc28a
XM_022672824.1 mRNA downstream 5986 16687918 ~ 16713041 (+) True LOC103021824
XM_015604621.2 mRNA downstream 39293 16721225 ~ 16729066 (+) True LOC103022442
XM_022672825.1 mRNA downstream 39293 16721225 ~ 16729066 (+) False LOC103022442
XM_022672828.1 mRNA downstream 78891 16760823 ~ 16767006 (+) False LOC103031040
XM_007239267.3 mRNA downstream 78893 16760825 ~ 16767006 (+) True LOC103031040
TU108900 other upstream 1095317 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 1497250 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 1876811 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 1949849 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 2726450 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 1778198 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 1778198 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 1778198 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 1778198 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 1778198 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile