RNA id: TU109541


Basic Information

Item Value
RNA id TU109541
length 202
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G81288
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 17093784 ~ 17093985 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAACATAAGACTCGACCTAAATATGGACGTAGCGAAGAGGAATGCCACGAGGAAGGCGGACCTGGCGTATCTCCGGTTCCTCGCGGAGCTAATTCGGGGGGATGAACCGCTCCCGGCGCCTCTCCGTGGGGTGGAGAGTGTCAGcccagctccagctaagctagctagcctgctaacTCCACcgcgctctcaagcccggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109534 lncRNA upstream 62425 17031063 ~ 17031359 (+) True G81282
TU109471 lncRNA upstream 110855 16979417 ~ 16982929 (+) True G81243
TU109449 lncRNA upstream 229242 16864111 ~ 16864542 (+) True G81224
TU109443 lncRNA upstream 248056 16840224 ~ 16845728 (+) True G81220
TU109415 lncRNA upstream 363610 16729820 ~ 16730174 (+) True G81197
TU109544 lncRNA downstream 26507 17120492 ~ 17120738 (+) True G81291
TU109546 lncRNA downstream 27147 17121132 ~ 17121545 (+) True G81293
TU109565 lncRNA downstream 416713 17510698 ~ 17510913 (+) True G81312
TU109590 lncRNA downstream 542719 17636704 ~ 17640481 (+) True G81335
TU109597 lncRNA downstream 542980 17636965 ~ 17640481 (+) False G81335
XM_022672829.1 mRNA upstream 255080 16782537 ~ 16838704 (+) True sh3yl1
XM_022672828.1 mRNA upstream 326778 16760823 ~ 16767006 (+) False LOC103031040
XM_007252209.3 mRNA downstream 422987 17516972 ~ 17519541 (+) True LOC103043735
XM_022672838.1 mRNA downstream 660568 17754553 ~ 17876082 (+) True asap2
XM_022672839.1 mRNA downstream 660568 17754553 ~ 17876082 (+) False asap2
XM_022672840.1 mRNA downstream 660568 17754553 ~ 17876082 (+) False asap2
XM_007252206.3 mRNA downstream 660568 17754553 ~ 17876082 (+) False asap2
TU108900 other upstream 1510453 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 1912386 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 2291947 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 2364985 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 3141586 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 1366145 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 1366145 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 1366145 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 1366145 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 1366145 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile