RNA id: TU109546


Basic Information

Item Value
RNA id TU109546
length 414
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G81293
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 17121132 ~ 17121545 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

catgaacatcacagagagggacattgcgtctggtagcaacattgggcaggacaatacatgcaagtgttatgttgcatgctCCCTGTGGTTCGACTCGCAAATAGTTAAGGCATGCAAAGCGTCTCTGCAGAACACTCGATTGctcgtattgttttgcaataagcagtatcttgttactgcaagaaaaggagtcatcaacccctgttggttcttctatctgttttttacatagctggtaatccggattaggtaatcctgaaaactgtgtttctggatcaggttgatccaatccaatattgctttgaaaaactggcttaaaagtaagacagatcacctgatcctggatagcaaaaaatgtgattaccaaatctggataattttgatccggattacattttttgaacaactggccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109544 lncRNA upstream 394 17120492 ~ 17120738 (+) True G81291
TU109541 lncRNA upstream 27147 17093784 ~ 17093985 (+) True G81288
TU109534 lncRNA upstream 89773 17031063 ~ 17031359 (+) True G81282
TU109471 lncRNA upstream 138203 16979417 ~ 16982929 (+) True G81243
TU109449 lncRNA upstream 256590 16864111 ~ 16864542 (+) True G81224
TU109565 lncRNA downstream 389153 17510698 ~ 17510913 (+) True G81312
TU109590 lncRNA downstream 515159 17636704 ~ 17640481 (+) True G81335
TU109597 lncRNA downstream 515420 17636965 ~ 17640481 (+) False G81335
TU109600 lncRNA downstream 515420 17636965 ~ 17640150 (+) False G81335
TU109615 lncRNA downstream 607421 17728966 ~ 17729447 (+) True G81347
XM_022672829.1 mRNA upstream 282428 16782537 ~ 16838704 (+) True sh3yl1
XM_022672828.1 mRNA upstream 354126 16760823 ~ 16767006 (+) False LOC103031040
XM_007252209.3 mRNA downstream 395427 17516972 ~ 17519541 (+) True LOC103043735
XM_022672838.1 mRNA downstream 633008 17754553 ~ 17876082 (+) True asap2
XM_022672839.1 mRNA downstream 633008 17754553 ~ 17876082 (+) False asap2
XM_022672840.1 mRNA downstream 633008 17754553 ~ 17876082 (+) False asap2
XM_007252206.3 mRNA downstream 633008 17754553 ~ 17876082 (+) False asap2
TU108900 other upstream 1537801 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 1939734 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 2319295 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 2392333 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 3168934 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 1338585 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 1338585 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 1338585 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 1338585 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 1338585 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile