RNA id: TU109590


Basic Information

Item Value
RNA id TU109590
length 3250
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G81335
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 17636704 ~ 17640481 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCTTGGTGTACGTATTTACATGCTGAAAGAGCTGGGTATCCTCCCTTTCTATTACCAACCTGCTCTGTAACAAATCTACCTGGTTGCCAACCTATTCTATTGCCAACCTACCCGCTTACCGACCTGAAAAAACATTGGAAACTGTAAACCTCAGGCACATGTTACACACCAAGTACATGAATAATTCTGACCTCACTGGAAACAGATTTATTATAATGacttttattggctggttgaaTCAGTAGGTTACTGTCAACACacaagacataaaaaaacaggatgaaAACACTCTGACAAAAACGCTCCCCCAACACCCACTGCAGTTAATGATACAATtggttttcagtgttttctgaatGAGGTAAAAATCACAGTGTTGAGAAAGTACACTGAAATATTTAAGAACCACCcccaaatttaaaacaaatgataAATGAATAGACTAAAAGTACAATTTGTCTTAGATTAAGCAAACAGATAACTGATAGCAGGCAGATAAATCCCAGGAAGGCAAACAGGATTTATTCTTAACGTGACATTATGATCAAGATGGtggggaaacaaaaaaaaaaaataataacatcagCATCAAGTACAAGAATCGTAAGAAATCTTTTGGCTTTGTTAAATGTTGAAGCACTTAGTATTGAATTTGAAAATTCAAATCTTTTACTGCATCCAAACTGACCAGCAATGGCTTTGActgggaaaaagaaaaatctgcttttaggaACCAAATAAAGGCTACAGTGTTTCGATCACATGACCCACCTGGGTGCAAACCCCATCAGACAACAGTGACAGTAGGGCAAAGAGTATTAAGTCATTAAGTCAATTGCAGCTAGATCCTTCTCAATAACACTTTCCCACCTACTGACTGAGAAGGCCTTTGGTTTTTTTCAGATGTAACAAATTAATCTGCCCATCAACACATTAGTAAACAGCAGTAACTTTTTTTACCATCTGAAAGTACTCATACTTTTTAAACCTACGATTCCCCTCTCTATATTAACTCGCAGTTTGAGTTTGTGTCCTACACAGCAGAATCGATGTgctgtctttttttaaaaggcCAAAAGGAGTTAAAAAGGGAGAGCCACCAGTCACTAGTAACTAGAATGGGGAACTTAGATGATAGACTTAGTTGAGACTCTGTATACTACTGTATAAGAACACCTGTAAGGGCACAGATCAACATATCCATGAACAAGACAATGGTAAAGAACATCTGATTAATGAACCACTGTGCCAGTTCCACATCGGTGGAAAAGATTATTagtggtgtagcacagcatagtcacccaggCGAGGAATTGAACCGGGTTAAACGCGTCTACCACACGGTGTGGGTGCTCACTGGTGGGTAGTGGTGGGTAGTTTTCTATAGGTTTCTATAGGTACTTTAAAGAACCCATTGtccaaagaaccatttaaaacatctttattttttaaaaccacaTGAGGTGTCCTATAAACAATGACTTTTTGAACACAAAAGGACTATGACTGAACTCCAATGAACAGAATAAGGCTGGTGGTCCATGTTGCTAAGATAAAGAACAAGGACCTCAACAAATCTGAGGAAAGCTGCCGCAGTCGGACTTAGATGCAACGCTCTGTTCAACGAATACTTAAACAACATGACGATATTTACACTAAACAGGTGTTTACATACATTCACACGCAGGTACACTGACAATGTTATGGTTTTGCACTCTTCAAAAGACGGCATAGCAAGGTCACGgctttttagatatttttaacgTTCCAACCAAAAGTCCTACACCGCCACTCCCACCCAAGGTGTCAATGTTGACCTTTAAAGAACCATCTGACAACAGTAGTGTTTCTACAGTGCACACGGCCCATTGCATTTTCTTGCATTGCTCTGCCGGTATTTTAGCGCTAAGTCACCTCATTCCTACAAAAGTGGGAGAGAAGAAaagctctctgttttttttaattaaaaataactttcaTTTATGACCAAATAAATTCTTTTTTGGGAAGTCCTTTAGTGAAAAAACCTCGAACCCTGTCGTGCGCCTGTATAAACAAAGGGAGTAAGAACGTACAACATTGTGTGTGCCACGTGTGATTTGGCACTTTGGACATATGAAGCAAGTTTTGCATTGATGTGCTGGTTGTGTGGTCGGGAACACTcaacttattgtttttttttcccctttggCCTTTTGGGCAGTTACACCACAAATCTACGacaagaacaacaacaaaaaaagagataaaaagtaataattaatataaactaaAAGAAAATTTTCATTTGTTGGACTCTCAGTGCAAAAGCTGCTCACATATAGAGCTATAATCAGGGATTGTGCTGCGTTCCATTGTGTTCCATTAAAACTCGGATGTCGGAAAGCTGAAAATTTCAAATTAAATGCCCCCAAGAATCAGATTATTCCTACTCAAAAAGCCAAGagagttcagaatccaagatggctgctaTATCACTTATGAAGTGTAGTAAAAACAGTAGTTTCTtacagtttattagcacttcTACCTATTTGcatgttattattaaatcatactgtgtcatacacacagtacacactgtCCAATTCTTTTCTGTgaagatggaagatcacagccatcaaaccaagatgaacttcCTGAatgttttgcaccagtagtggcataaagttatccaaaagcagtgtgtaagactagtggaggagaacatgccaagatgcataaaaactgtgaatactgatttctgaactccagAGCTGttttgctaacaatgctaacctatGACAGTGCAAACAATAGTAAAACTGGTAAATTGTTGTCAAAGCATTTGTAATAGATCAATAGATCATAGATCAATAAAATGACTGGAATGTCATCACTCAGGTGTGAAATCTTTCCCAGCTCTGACATTCGACTCCCAAGGTAAACGGAACGCAGCATTATAATAATCAGAACTAATggcaataaaacatttaagaaaggACTTTGGGACATTCTAACATCATCCTTAATAGGCAGACAATGacatatttactttaaattgttCAAAGAAAATCAGAGCGTTGCTTGTGTTAATTGtaaacaatgaaactaaaatccACTCTCAAGGAGGTTCTCTCAAGAACACAAGCATCTGAAATACCTGGACAGTGTAGATcatctttatatataaattaaaaatactcatatacagctctggaagaaaaaaaatatgaatttctttgattttaccaaattgaaaacctctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109565 lncRNA upstream 125791 17510698 ~ 17510913 (+) True G81312
TU109546 lncRNA upstream 515159 17121132 ~ 17121545 (+) True G81293
TU109544 lncRNA upstream 515966 17120492 ~ 17120738 (+) True G81291
TU109541 lncRNA upstream 542719 17093784 ~ 17093985 (+) True G81288
TU109534 lncRNA upstream 605345 17031063 ~ 17031359 (+) True G81282
TU109615 lncRNA downstream 88485 17728966 ~ 17729447 (+) True G81347
TU109622 lncRNA downstream 232284 17872765 ~ 17940581 (+) True G81348
TU109624 lncRNA downstream 238549 17879030 ~ 17879762 (+) True G81349
TU109633 lncRNA downstream 251821 17892302 ~ 17894351 (+) True G81358
TU109731 lncRNA downstream 387067 18027548 ~ 18037050 (+) False cmpk2
XM_007252209.3 mRNA upstream 117163 17516972 ~ 17519541 (+) True LOC103043735
XM_022672829.1 mRNA upstream 798000 16782537 ~ 16838704 (+) True sh3yl1
XM_022672828.1 mRNA upstream 869698 16760823 ~ 16767006 (+) False LOC103031040
XM_022672838.1 mRNA downstream 114072 17754553 ~ 17876082 (+) True asap2
XM_022672839.1 mRNA downstream 114072 17754553 ~ 17876082 (+) False asap2
XM_022672840.1 mRNA downstream 114072 17754553 ~ 17876082 (+) False asap2
XM_007252206.3 mRNA downstream 114072 17754553 ~ 17876082 (+) False asap2
XM_007252207.3 mRNA downstream 114072 17754553 ~ 17876082 (+) False asap2
TU108900 other upstream 2053373 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 2455306 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 2834867 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 2907905 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 3684506 13925869 ~ 13952198 (+) True LOC103026193
TU109871 other downstream 819649 18460130 ~ 18464096 (+) False LOC103035760
TU109872 other downstream 819649 18460130 ~ 18464096 (+) False LOC103035760
TU109873 other downstream 819649 18460130 ~ 18464096 (+) False LOC103035760
TU109874 other downstream 819649 18460130 ~ 18464096 (+) False LOC103035760
TU109875 other downstream 819649 18460130 ~ 18464096 (+) False LOC103035760

Expression Profile