RNA id: TU109865


Basic Information

Item Value
RNA id TU109865
length 1388
lncRNA type read_through
GC content 0.39
exon number 2
gene id G81539
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18447388 ~ 18500711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATAAAAACATACCAGCTGATCATGTACAGTAACAACCaaattgtgtgcatgtgttttttttctgtgtataatAATCTAATGTTTACTATACATTCATTTAAATCTAAGGTTCTGCGTCCAGTTCTCAGGATCCCTATCCTCCATTccacttttttcttgtttttacatTCCAAACCACAAGCAAAAATCACTGGAAGTCCTGGAGGGCTGGATTGGATTTAGATCTCTTTATGATCTTAAttcaagtaaatctgcaacaCACTATTCTGTAACATTCTGTAACCATTGTGAGTTTTCTGTGAATTTTATCACTAACTgagatttcttttaaaaaaccACTCACTACATTTTGTTCTCCAGTATGACTGTTTCTGCATTCCCACAAAGTTTTGAGGTTTGTCAAAGTAGGCCAGAGAAGCATACACTAAAAACACCTCAGGATATTGATCGTATCTCTCATCTTCTATTACATATTAGTAATAAACCTCAACCACATACACTTATACCTTTTTAGCAGGTTGTTAATATGTCTTCTTCTGGAAAGCTaatgtaatacactacaggacagtgtgctTGCTAGTAATAAGTAACATTGCCCACCCCCCTGACCCCTGTCCTGCTCTGACAAATGTATTTTCTGGTAACCCTCAATGTTTGAGGTCCTCTGACAGCAGTACTTCATGTACGTAGTACATCAGTGTCTGCTAATGCTaagctttaaaaacacagtaccTCTCCTGCTCAGTCTTCACCCTTGTACTATTGAACTGATTATTGTATTCTGACTTCCTCAGCTAAGCAAGCAGATTTATATTGTTCACCTTGTTGGACAATATGTCCATATGTGAGACATATGTTGGACAATATGTTTCACCTTGTTGAGACCTCTCTGCTGTTTAGAGTCCTTGGGGAACAACAAAAGCATTGTTAGAATACAGCATACACTATAGTAGACTCTGTTAGAACAAGATCTCTCCACACGTCTGGTCAGTTGGCCCCAGCtgggtttatttcttttttctgatAGATCTGTACTGACTTCCACAGTCACACTGCTTCCTTTCCTGCTGCCGCTACTGTTCATCAGGACTCTGTTTGTACTTTTTCTGGCATGAGGCTAAGGAAAGGTTGCTCCTAACAGATAACCTCTGACTGCAGGATTATTCTGATTTAGTGATGCCAGCCAAGGAATCGGCCACGCGTTGAACTTCCTGCGGCTGTTTGTTCGTCTTTGCGGGGTCATCTTCGAGTCTCCCGTGTGAGGAGCTCTTGACCTTTACCTGCCGCTAATCCTCAGGCCTCAATGTGTCTGCGgtttcttttttgcattttacgttaaagtaaagtcagatcTAAAGAATattacaaatgttttattttacaaagaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109863 lncRNA upstream 4677 18441069 ~ 18442711 (+) True G81537
TU109771 lncRNA upstream 170198 18276863 ~ 18277190 (+) True G81466
TU109770 lncRNA upstream 180904 18266219 ~ 18266484 (+) True G81465
TU109762 lncRNA upstream 237047 18209785 ~ 18210341 (+) True G81460
TU109754 lncRNA upstream 310182 18136612 ~ 18137206 (+) True G81452
TU109895 lncRNA downstream 44758 18545469 ~ 18550207 (+) True G81558
TU109957 lncRNA downstream 204104 18704815 ~ 18706282 (+) True G81600
TU109962 lncRNA downstream 213494 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA downstream 213494 18714205 ~ 18715897 (+) False G81602
TU110103 lncRNA downstream 364965 18865676 ~ 18865988 (+) True G81701
XM_015605081.2 mRNA upstream 7299 18436289 ~ 18440089 (+) True LOC103032442
XM_022672849.1 mRNA upstream 35566 18349742 ~ 18411822 (+) True LOC103046791
XM_007252519.3 mRNA downstream 2480 18503191 ~ 18510469 (+) True LOC103034157
XM_007252520.3 mRNA downstream 3523 18504234 ~ 18510469 (+) False LOC103034157
XM_007252518.3 mRNA downstream 10911 18511622 ~ 18520947 (+) True LOC103033848
XM_007252517.3 mRNA downstream 23043 18523754 ~ 18528689 (+) True mrpl35
XM_007252514.3 mRNA downstream 50310 18551021 ~ 18567654 (+) True hspa4l
TU108900 other upstream 2864057 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 3265990 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 3645551 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 3718589 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 4495190 13925869 ~ 13952198 (+) True LOC103026193
XR_002650340.1 other downstream 10911 18511622 ~ 18520947 (+) False LOC103033848
TU110107 other downstream 429527 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 1165025 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 1172416 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3856933 22357644 ~ 22358135 (+) True G82488

Expression Profile