RNA id: TU109871


Basic Information

Item Value
RNA id TU109871
length 638
RNA type TUCP
GC content 0.48
exon number 5
gene id LOC103035760
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18460123 ~ 18469635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGCTAAATCTCAGCCGCGCAGTGTGTCGGTTTGCTGGGCTGGAGGGGGCTTGTCTCTCTGGGAAAGAGCCAGTATGGAGCTGCCGCGGGACGGACGAATTTTTAGGCGAAATGTGGGAGCAAGGTCCACTGTGTCGGCTTGTTCGTCTTTCGCCATGGAGGTTAAGAGGAAGAAgataagagagagtgtgttgttCCTACAAAACGAGGACTGTGATATACAGGAAAAGATGGACTTTGAGATGCGCATGAGAGCTGGTGCATACAAGCTTCTGGTTGCCAGCACCAAGAGAGAACAGATCCTTGATGCAGCCAAAAGCCTCTTGACCTGCAATGCGAGAATCAAAGCCTATATGTCTGAGGCacaaagaagaaaagaacagcAGGACAAGGCTAAGAGTCTTAGAAGAAGGTCCTTAGATTCCCAGAACCAGGTGCCTTGTAAGGGAAAAGTAGCCATATCGGGTCTGAGAATCCCACTTTTTTGGAAGGATTCTGAGCACTTCAACAGCAAAGGGAATCCTCAGCGAGTGGCGGTCTTTTGTCTAATGAAGATTGGCACTGAGATATTTGACACAGAGATGGTGattgtagacagaacaataactgATATCTGCTTTGAGGGTGTAACTGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109863 lncRNA upstream 17419 18441069 ~ 18442711 (+) True G81537
TU109771 lncRNA upstream 182940 18276863 ~ 18277190 (+) True G81466
TU109770 lncRNA upstream 193646 18266219 ~ 18266484 (+) True G81465
TU109762 lncRNA upstream 249789 18209785 ~ 18210341 (+) True G81460
TU109754 lncRNA upstream 322924 18136612 ~ 18137206 (+) True G81452
TU109881 lncRNA downstream 6311 18470407 ~ 18471571 (+) True G81547
TU109866 lncRNA downstream 11021 18475117 ~ 18498878 (+) True G81540
TU109895 lncRNA downstream 81373 18545469 ~ 18550207 (+) True G81558
TU109957 lncRNA downstream 240719 18704815 ~ 18706282 (+) True G81600
TU109962 lncRNA downstream 250109 18714205 ~ 18717199 (+) True G81602
XM_015605081.2 mRNA upstream 20041 18436289 ~ 18440089 (+) True LOC103032442
XM_022672849.1 mRNA upstream 48308 18349742 ~ 18411822 (+) True LOC103046791
XM_022672852.1 mRNA upstream 48308 18349742 ~ 18411822 (+) False LOC103046791
XM_022672850.1 mRNA upstream 48308 18349742 ~ 18411822 (+) False LOC103046791
XM_022672853.1 mRNA upstream 48308 18391781 ~ 18411822 (+) False LOC103046791
XM_007252521.3 mRNA downstream 17583 18481679 ~ 18497039 (+) True zfyve28
XM_007252519.3 mRNA downstream 39095 18503191 ~ 18510469 (+) True LOC103034157
XM_007252520.3 mRNA downstream 40138 18504234 ~ 18510469 (+) False LOC103034157
XM_007252518.3 mRNA downstream 47526 18511622 ~ 18520947 (+) True LOC103033848
XM_007252517.3 mRNA downstream 59658 18523754 ~ 18528689 (+) True mrpl35
TU108900 other upstream 2876799 15563987 ~ 15583331 (+) True G80857
TU108802 other upstream 3278732 15174995 ~ 15181398 (+) True LOC111193203
TU108651 other upstream 3658293 14788602 ~ 14801837 (+) False LOC111193140
TU108641 other upstream 3731331 14725927 ~ 14728799 (+) True G80648
TU108374 other upstream 4507932 13925869 ~ 13952198 (+) True LOC103026193
XR_002650340.1 other downstream 47526 18511622 ~ 18520947 (+) False LOC103033848
TU110107 other downstream 466142 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 1201640 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 1209031 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3893548 22357644 ~ 22358135 (+) True G82488

Expression Profile