RNA id: TU109962


Basic Information

Item Value
RNA id TU109962
length 1942
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G81602
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 18714205 ~ 18717199 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTTATTAAATGGAAACATTAGTAAGCAACCATTCAAAAGACAACATAACTTGTCATTACCACTATTCTCATCCAGGGTTTCTGAACAAACTCCCTAAAATAATTAGAGGCATGTCCCAGATGGGTTTATTTGGTTTCGTGAGGATTTGCAGAGATGCTGAGTGTCAGTCAGTTGACCGGTCTTATGCAGACAAAACAGCACATTATCATCTGCCTCAAAAGCTGTATGCAATACGAAACTGTTACAAATGCAGGTTGAATTTCAACAAGCTCATAAAAACACAAGGAAAATCCTTTCATGTTTATGCATTTACACCAAATGTCATGTTCGTTTTTCTCCCCCTTATATAAAGCTCAaactttaaagaaaagaaaatatggaATGTAACCATGTGTATGTTTCAGTAGCCCTTGTGAACATCACAGTTAATGGCTACTCTCTTCCCTTAAGTGTGACTCTGTGCAACATACAGAACACATAGTTCAGCGCAAAGGTCTGTGTGCAGGTTAAAAGCCTGTCTCCATAAAAGATTGTTCAACAAAGGGAATACAGAAGAAACTGAGTCTAATTTGTAATGGTTGAAAGAAAATCTACAAATATATCAAAACGCCAATCAaaagtatattatataaaagtggTGAAATAATAGACATGTCATTGTACTGCCATACTCAGTAAAATTCAAACAAACATTTCCAACATCTCCTGCTTTAGTTCCAGAGAACTGTGATTCTTAACATTGCTttgtttaaaagtatatttgataaaCATGGACAAAGGTAAATCAAATAGCTTGAACCAACATGAATTTCTCATGGTATGAAATGCAGCTGAATGGAGAAATGGAAGTACAAGCTGAATCTTTCTAAATAAAAGTTTGATCAAAATAAATTTCCAGACAGCTGCTAGTCTGAAGGCCAGTTTAACAGATAATTCTAAATAATCACATTAAAGAACCCAAGGAATCTCTTTGTTAGTAAAATCATGCTTAGGTCCAATTTAGTCAAAAATAATTGAACAACCAGCAGTAACATACTTTGGCCCATCTATTTAGTAGACATaatattagctgatcaggtgatATTGAATAATGTTTAATACTTGAAATCACTGCAGACCAGGGTTTCTGGCCAATCATGTCAGTCTTGATCTAGACCCTAGTCTTGATATCTTACACCACATCCcctaaaacataataaaagcaTCATCAAAGTAAATGTACAGCTAATACGTATATGACCATCATGTGTTAAAACACAGAAGTAAAATCAGGCAATAAGGTCTCACTGATAGGAAAGGATACCACTGATGCTTTAAGCTAACTGTTGTACGGAACTGCAGCATGTAACCATTAGCTAGCACAGATACTCTTAAGCCAAACTCCAGGTTTGGTGCTGAATTCGTCACTGTCCGTTCTGTTGGAGCCTTTCCAGTCGATGAAGCAGAGCGTTTCCAAAGGCTTCTCTGTAGCCAGGGCTGAGGGAGTCCAGAAGAGAGTAAACAGTCTCATGATACTGGTTGCTCAGATCCTCATCCACCTGATCAAAGGAGTAGCCCACCAcCCTTAACCCCGCCTCGGTGAGCTCAAGGCAGTAGCGGTTTCCTTCTCTGGTCTCCACGTTTATGTAAGCCACGTCCAGACCGTTGGACAGAGTTTGAGACACATGCATGTCCGTCACAGCGAAGAGCACGTCGTTTACCACAGCTTCAGCCTCCAGCCTCATGTCTTTAACTCCCCCGAGATCAGCACAGCGCTCTTCGTACGAGGACCTCGACAGTTCCTCTGGCTGACAGTCCACTTCCATCCCCTCCTCCGGGGGTAGTTCAGCGGTACACTTCCGGCTCATGCCGGCAAAAATGGGTGTGTTCATCTTCAGCCAGCctcattctgcgctgtgtgtgagtgagtgagtgagtgagtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109957 lncRNA upstream 7923 18704815 ~ 18706282 (+) True G81600
TU109895 lncRNA upstream 163998 18545469 ~ 18550207 (+) True G81558
TU109865 lncRNA upstream 213494 18447388 ~ 18500711 (+) True G81539
TU109866 lncRNA upstream 215327 18475117 ~ 18498878 (+) True G81540
TU109881 lncRNA upstream 242634 18470407 ~ 18471571 (+) True G81547
TU110103 lncRNA downstream 148477 18865676 ~ 18865988 (+) True G81701
TU110111 lncRNA downstream 213957 18931156 ~ 18937144 (+) True G81705
TU110115 lncRNA downstream 224209 18941408 ~ 18941814 (+) True G81708
TU110135 lncRNA downstream 583159 19300358 ~ 19324568 (+) True G81725
TU110136 lncRNA downstream 583159 19300358 ~ 19324211 (+) False G81725
XM_007252508.3 mRNA upstream 1318 18708412 ~ 18712887 (+) True npc2
XM_022672865.1 mRNA upstream 10130 18634169 ~ 18704075 (+) True eml5
XM_022672866.1 mRNA upstream 10130 18634170 ~ 18704075 (+) False eml5
XM_007252505.3 mRNA upstream 10130 18634170 ~ 18704075 (+) False eml5
XM_007252507.3 mRNA upstream 10130 18634170 ~ 18704075 (+) False eml5
XM_022672861.1 mRNA downstream 3023 18720222 ~ 18749129 (+) True atg2b
XM_022672863.1 mRNA downstream 3023 18720222 ~ 18749129 (+) False atg2b
XM_022672874.1 mRNA downstream 33494 18750693 ~ 18763574 (+) False msh4
XM_022672872.1 mRNA downstream 33497 18750696 ~ 18764580 (+) False msh4
XM_022672871.1 mRNA downstream 33497 18750696 ~ 18764122 (+) False msh4
XR_002650340.1 other upstream 193258 18511622 ~ 18520947 (+) False LOC103033848
TU109874 other upstream 250109 18460130 ~ 18464096 (+) False LOC103035760
TU110107 other downstream 213039 18930238 ~ 18930754 (+) True G81704
TU110177 other downstream 948537 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 955928 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3640445 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 4513231 23230430 ~ 23231318 (+) True G82609

Expression Profile