RNA id: TU110135


Basic Information

Item Value
RNA id TU110135
length 234
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G81725
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19300358 ~ 19324568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaacactttacttggatggtccattttatggccttgttgatgctcaactgacattcaactaacactgaattgaatgtccattaaatttaacttaaccctatgttgaatgtaaatgattaaaatagaacctaaccctacacctaaccctaaccttaatcattaattaaccctaaaatcaacccctacatctaaccctaaccttaacccttaatcaaccctaaaatctaacccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110115 lncRNA upstream 358544 18941408 ~ 18941814 (+) True G81708
TU110111 lncRNA upstream 363214 18931156 ~ 18937144 (+) True G81705
TU110103 lncRNA upstream 434370 18865676 ~ 18865988 (+) True G81701
TU109962 lncRNA upstream 583159 18714205 ~ 18717199 (+) True G81602
TU109963 lncRNA upstream 584461 18714205 ~ 18715897 (+) False G81602
TU110155 lncRNA downstream 204859 19529427 ~ 19531587 (+) True G81742
TU110160 lncRNA downstream 218814 19543382 ~ 19546608 (+) True G81745
TU110185 lncRNA downstream 351995 19676563 ~ 19676889 (+) True G81769
XR_002650344.1 lncRNA downstream 397631 19722199 ~ 19744428 (+) False LOC111193210
XR_002650343.1 lncRNA downstream 406617 19731185 ~ 19744428 (+) True LOC111193210
XM_007252500.3 mRNA upstream 470401 18810473 ~ 18829957 (+) True LOC103028664
XM_007252503.3 mRNA upstream 500140 18765653 ~ 18800218 (+) False ktn1
XM_007252195.3 mRNA downstream 440768 19765336 ~ 19767308 (+) True LOC103039716
XM_022672891.1 mRNA downstream 475629 19800197 ~ 19828205 (+) True LOC103040036
XM_007252188.3 mRNA downstream 825850 20150418 ~ 20154682 (+) True LOC103037509
XM_007252180.3 mRNA downstream 836700 20161268 ~ 20174309 (+) True LOC103035446
XM_022672912.1 mRNA downstream 860342 20184910 ~ 20199839 (+) True tmem62
TU110107 other upstream 369604 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 779411 18511622 ~ 18520947 (+) False LOC103033848
TU109875 other upstream 836262 18460130 ~ 18464096 (+) False LOC103035760
TU110177 other downstream 341168 19665736 ~ 19666047 (+) True G81761
TU110179 other downstream 348559 19673127 ~ 19673638 (+) True G81763
TU111179 other downstream 3033076 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 3905862 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 4550871 23875439 ~ 23877767 (+) False timm9