RNA id: TU110457


Basic Information

Item Value
RNA id TU110457
length 279
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G81955
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20372114 ~ 20372392 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctatatttctataaatccgttttcagtttctcctccgtggttgaaaggcagctgtctctcacacagcagaactgagggcggggctgcgctcatgcagaggctctctatttaaatgaataggatgcgctgtgttggtgccgcgccatttgcgtagcgcgctgcgctatttgcgtagcgcgcgcgggagggatcgtcgatcctctttttgacttcgatactcgagaccatgacctcatttcgattcgatttcgataaaatatcgagatcgtgacaccccta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110415 lncRNA upstream 70382 20301278 ~ 20301732 (+) True G81920
TU110414 lncRNA upstream 99391 20261599 ~ 20272723 (+) True G81919
TU110411 lncRNA upstream 148446 20222482 ~ 20223668 (+) True G81917
TU110406 lncRNA upstream 184961 20185814 ~ 20187153 (+) True G81913
TU110374 lncRNA upstream 192584 20149777 ~ 20179530 (+) False G81899
TU110492 lncRNA downstream 171319 20543711 ~ 20543911 (+) True G81983
TU110524 lncRNA downstream 400364 20772756 ~ 20776477 (+) True G82014
TU110591 lncRNA downstream 575204 20947596 ~ 20948442 (+) True G82073
TU110607 lncRNA downstream 646700 21019092 ~ 21019862 (+) True G82089
TU110606 lncRNA downstream 649678 21022070 ~ 21022572 (+) True G82088
XM_007252178.2 mRNA upstream 125804 20213109 ~ 20246310 (+) False elmsan1
XM_007252176.3 mRNA upstream 125804 20220330 ~ 20246310 (+) True elmsan1
XM_022672912.1 mRNA upstream 172275 20184910 ~ 20199839 (+) True tmem62
XM_007252180.3 mRNA upstream 197805 20161268 ~ 20174309 (+) True LOC103035446
XM_007252188.3 mRNA upstream 217432 20150418 ~ 20154682 (+) True LOC103037509
XM_022672917.1 mRNA downstream 18978 20391370 ~ 20446806 (+) True mta1
XM_007252559.3 mRNA downstream 75518 20447910 ~ 20464852 (+) True tmem229b
XM_022672923.1 mRNA downstream 342031 20714423 ~ 20771645 (+) True LOC103044638
XM_022672928.1 mRNA downstream 405046 20777438 ~ 20888798 (+) True slc25a21
XM_007252556.3 mRNA downstream 405046 20777438 ~ 20888798 (+) False slc25a21
TU110179 other upstream 698476 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 706067 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 1441360 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 1851167 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 1908018 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 1985252 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 2858038 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 3503047 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 3503047 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 3537290 23909682 ~ 23920698 (+) True G82811

Expression Profile