RNA id: TU110609


Basic Information

Item Value
RNA id TU110609
length 1670
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G82091
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21024135 ~ 21025804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCCAATATTTGCCAAATGCAAGCATACTGACAGATACATGCATCAATAtaacctaaaatctaaaattataAATGCTTTTGGAAACAGTAATTGGTTTCTTTTATCCAACTATCCAACATCATATTCATTTAATGTATCCATAATGTGTAAAAACCTCAGCACAACCTCCAAGCGATTAAAAACAGGCGTCCTAGATCCTCatcccctgcaaaaacaaagtGCAGGTCTGAGCGCCTGAGAGAGATGGTGAGCGCTCGCTGTCTGCCCACATCATCACGGAGCATCACTCCACTTCCGCGGCAGATGAAAGGGTGAGCGGCAGGGCTGACCGCTGCCAGCACAGAACAGATACGTATTCACGCTGCGCCCTCTGTTACAATAGCAGGGAAAAAAAGGGCCACACAATTAATGAAGCTCCTGAGAGCATTAAAGTAGGCCAACAATAACTCCAACAAGCTCTTTTCAAGGGCACGCTGCTACATTAGCCATTCTCTATGCCTCTGATAACGGTAAACAGTACCCACTACACACATGAAACCCTCACACGGCCAGCCTGACCTGAAGCTCCTGCAACTGGCCAACTTCAACTAGAAGTGCTGTACAGATGAATGAAACAGTGGAATGCAGGACTGACCTATCGATGGAAAGAGAAGCAGAAGCCCTGACATCTGTTCTGCACAGCAATGGAGAATTTCTCATTACAGACACAGAGGTTTGAATGATATTTTACTTTTGTTGTTTATGATACAAGACGACATTTTCCCAACACACATCCCAATATTTACTGATTCTGAGGATtgtaaaaacttttaaactgaTAGAAAGCACCAGCAAAACAAAAGTatgccatttttaaaaatgtaaatactgcttcagccttagtgctggagaaacttcagtgAAAACTCAGCTTTATaccgctgtacttcagtggagtggctttactgctctttaataaaTTGACGGGTAGAATTCTTattcaccggattataaggtgcactgtagatttttggtcaaattaaaggattttaagtgcaccttatagtctgaaaaatacagtatactttTAACTCCTAAGTTCCCAATGCAGTGACCACTAGAGATGCACAATCAAGAGATGGCTCAAGTTCAGAGTTTGGCAATAAACTTTGGCTTAAAACTTGCAATCGGCAGCTGCTGAATCCATTCAAATTATTGTTTTTGAGTTGCATCTTACTTTCAATGCTGTTATTTTAACTCATTATTAAACTTATTAAACAAGTAAATCATTTTTCATTGTATAATTGAATGGCAATATAGTAGCCAATTTACCACATATTAACAGTTCCCTGGTGCTTAATATAACAGCCAACAATACTTGTATCAACCgatctaaatctaaaactttCGTTTTTGTGCTGTTTACTTATGTAGGATAGGGAAAGATGTGGTACTGCAACCAGCCACTAGAGGACATGAGAGAGCATTTGGCTTCAATCCACTCTTAAACAGTCCTTTAAACAGTAATAAGCCACTGCCCATCCAGTCCCCCATCCTTTCATAACTCCTCTGTCCAGCCACACTCTCTTTTGTGCTCATGATGATCTCATTTCTTTCTAGCATTTACTTCACAACTTCGTctttctttttaactttttattaacACACTCTTGTTCATTCATTGCTATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110608 lncRNA upstream 277 21023004 ~ 21023858 (+) True G82090
TU110606 lncRNA upstream 1563 21022070 ~ 21022572 (+) True G82088
TU110607 lncRNA upstream 4273 21019092 ~ 21019862 (+) True G82089
TU110591 lncRNA upstream 75693 20947596 ~ 20948442 (+) True G82073
TU110524 lncRNA upstream 247658 20772756 ~ 20776477 (+) True G82014
TU110743 lncRNA downstream 365358 21391162 ~ 21394714 (+) True G82193
TU110744 lncRNA downstream 365358 21391162 ~ 21420420 (+) False G82193
TU110745 lncRNA downstream 372882 21398686 ~ 21399884 (+) True G82194
TU110801 lncRNA downstream 462208 21488012 ~ 21488214 (+) True G82234
XR_002650347.1 lncRNA downstream 465897 21491701 ~ 21506791 (+) True LOC111193214
XM_007252553.3 mRNA upstream 64744 20941708 ~ 20959391 (+) False mbip
XM_007252552.3 mRNA upstream 64744 20941709 ~ 20959391 (+) True mbip
XM_007252551.3 mRNA upstream 98467 20921537 ~ 20925668 (+) True LOC103043023
XM_007252568.3 mRNA upstream 106896 20915266 ~ 20917239 (+) True LOC103021743
XM_022672930.1 mRNA upstream 135337 20777438 ~ 20888798 (+) False slc25a21
XM_007252549.3 mRNA downstream 34891 21060695 ~ 21079622 (+) True cdan1
XM_022672918.1 mRNA downstream 55660 21081464 ~ 21136907 (+) True stard9
XM_022672919.1 mRNA downstream 115969 21141773 ~ 21189268 (+) True LOC103047712
XM_022672920.1 mRNA downstream 130339 21156143 ~ 21189268 (+) False LOC103047712
XM_022672922.1 mRNA downstream 168904 21194708 ~ 21279138 (+) True LOC103041063
TU110179 other upstream 1350497 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 1358088 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2093381 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 2503188 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 2560039 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 1331840 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 2204626 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2849635 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2849635 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2883878 23909682 ~ 23920698 (+) True G82811

Expression Profile