RNA id: TU110745


Basic Information

Item Value
RNA id TU110745
length 900
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G82194
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21398686 ~ 21399884 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACATAATAATTGAAACATCATAAATGATCGATACTTCTGTTCTGTACTGGTTTACCTGTGTTCTGGCTTTGAGGAAAGGGTGCCTCCAAAGTCCACTCCATCCTTTGGTTCTTCACTATGCTGAGAGGGTGTAGTGcttttctccagcactggagCTCTTTCCCCAGACCTGTGCTGTTCATGGAGACTATCACTgagtgaaaccgaaacttcactgGCTGTGTTCAGGGAAGACTCAGGTGAGATATCCACATCAGAACTGGAGATACTGGGGCTTCTGCTTTGATCCTAAAACATctggctgtttttctgctgaCACAGCTTGTTCCTTGGCTCCTTCAGCAGCCCCTTCGGCCTGCCCTCCAGAGTCACTGTGCCGTGAGGGGTCTCTCGTATAAGTGGTGTCTGGGGAAGGGTTCTGGCTGGGACAGTGTTGGAGTGACGCAGTGCTCTCGGCTCTCTTCACGTTTCTGTGATGAGAGGACACTCCAGATGCCTTCAAGGTCGTGTGAGGCAAGGCCGGCTGCTCCGGCCCATactcctctcctgctcctctGAAGAAGCCACAGTCAGGTGGTGGCGGCCGCCTTTCAGACGCAACGTCGGCGCTGTCAGGGAAATCGTCTGAGTTTAGAATGTCATCTGATAAAGCTGCGCTGCCGCTGGCTTTTGAAATCCGGGCATCCATCAAAGGACCACTTTGTGGCGAGGAAGCTGAGGGGTGATTAGGTATCAGCGCTGTCAGAGATGATGAGTGTGCGCTCCTGACGCCTTCCTCCACCAAAGTGCCTTTGAGGGTTTGCCGACCCGTGAAGATGACAGCAGGTTGGGAGGACTGTCCAATGTTGTGTTCAGGGAACTTGCTTTGCtcctataaaaaacaaacaaacaaaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110743 lncRNA upstream 3972 21391162 ~ 21394714 (+) True G82193
TU110609 lncRNA upstream 372882 21024135 ~ 21025804 (+) True G82091
TU110608 lncRNA upstream 374828 21023004 ~ 21023858 (+) True G82090
TU110606 lncRNA upstream 376114 21022070 ~ 21022572 (+) True G82088
TU110607 lncRNA upstream 378824 21019092 ~ 21019862 (+) True G82089
TU110801 lncRNA downstream 88128 21488012 ~ 21488214 (+) True G82234
XR_002650347.1 lncRNA downstream 91817 21491701 ~ 21506791 (+) True LOC111193214
TU110866 lncRNA downstream 157533 21557417 ~ 21557995 (+) True G82258
TU110811 lncRNA downstream 248380 21648264 ~ 21673438 (+) False ralgapa2
TU110881 lncRNA downstream 298447 21698331 ~ 21700510 (+) False G82266
XM_007252546.2 mRNA upstream 102430 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 119548 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 119548 21194709 ~ 21279138 (+) False LOC103041063
XM_022672919.1 mRNA upstream 209418 21141773 ~ 21189268 (+) True LOC103047712
XM_022672931.1 mRNA downstream 121023 21520907 ~ 21672140 (+) True ralgapa2
XM_022672936.1 mRNA downstream 514342 21914226 ~ 21926373 (+) True tmem87a
XM_007253814.3 mRNA downstream 527682 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 556124 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 600729 22000613 ~ 22046430 (+) False numb
TU110179 other upstream 1725048 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 1732639 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2467932 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 2877739 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 2934590 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 957760 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1830546 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2475555 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2475555 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2509798 23909682 ~ 23920698 (+) True G82811

Expression Profile