RNA id: TU110880


Basic Information

Item Value
RNA id TU110880
length 1528
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id G82266
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21698331 ~ 21700510 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttagcaaccacctattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccgcttagcaacaccttagcaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaactgcctagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttagcaaccacctggaaaacgttagcaactgcctagcaacaccgtagaaaccaccccagataccatagcaacaccttagcaaccgcatagcaacaccttagcaaccacctagcaacatcttagcaaccaccccagataccatagcaacaccttagcaacaccttagcaaccacctagcaaccacctagaaacaccttagcaacaccttagcaaccaccccagataccatagcaacaccttagcaacaacctagcaacaccctagcaaccacctagcaacaccttagcaactacctggtATATGTTAgcaattgcctagcaaccagttagcaatagcttaacaaccacctggaaaacattagcaactgcctagcaacagcttagcaaccttttcagaaatgatagcaactgcctagcaacacattagcaatcaaaagtttaaccaaaagttttacgatttcagcatttaaacaagcgtttttagatttcagtgtttaatcaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaactaaatgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaaccaaacgtttttagatttcagcgtttaatcaaacgtttttagatttcagcgtttaaccaaatgtttttagatttcagcgtttttaGCATTTAGCGTTTAGCCAAAAGTTAACAGCATATCAATgactcttcacactcttcagacGGAAAaagcttagcaaccattttaactttttaacgttattagcgttcttttccaagccaacttaaagttcgttcacgaactTTACCTTTTCTAGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110811 lncRNA upstream 25281 21648264 ~ 21673438 (+) False ralgapa2
TU110866 lncRNA upstream 140724 21557417 ~ 21557995 (+) True G82258
XR_002650347.1 lncRNA upstream 191928 21491701 ~ 21506791 (+) True LOC111193214
TU110801 lncRNA upstream 210505 21488012 ~ 21488214 (+) True G82234
TU110745 lncRNA upstream 298835 21398686 ~ 21399884 (+) True G82194
TU110891 lncRNA downstream 20119 21720629 ~ 21721378 (+) False G82270
TU110892 lncRNA downstream 20119 21720629 ~ 21721378 (+) True G82270
TU110952 lncRNA downstream 86664 21787174 ~ 21788940 (+) True G82311
TU110989 lncRNA downstream 167869 21868379 ~ 21869894 (+) True G82345
TU110993 lncRNA downstream 177545 21878055 ~ 21878741 (+) True G82349
XM_022672931.1 mRNA upstream 26579 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 402463 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 419581 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 419581 21194709 ~ 21279138 (+) False LOC103041063
XM_022672920.1 mRNA upstream 509451 21156143 ~ 21189268 (+) False LOC103047712
XM_022672936.1 mRNA downstream 213716 21914226 ~ 21926373 (+) True tmem87a
XM_007253814.3 mRNA downstream 227056 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 255498 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 300103 22000613 ~ 22046430 (+) False numb
XM_022672937.1 mRNA downstream 300104 22000614 ~ 22046430 (+) True numb
TU110179 other upstream 2025081 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2032672 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2767965 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3177772 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3234623 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 657134 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1529920 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2174929 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2174929 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2209172 23909682 ~ 23920698 (+) True G82811

Expression Profile