RNA id: TU110891


Basic Information

Item Value
RNA id TU110891
length 302
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G82270
representative False

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21720629 ~ 21721378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcaggggagttgtaaagAAATAGAAGCCCTGCACTCAGCAACTTACCGATTTTGGGCCTTTTTTTGAACAAGTCACCAATATTAGTAACAATGTTACCGCCGTTTTCTTCCGTTTTCGctccttgtcttcttttttacccattttctcaAGTAACTTTCCCCTGATTCTTTCCACAAGCTAAGAACAGAAATGGGGGAATTGCCGCCACCTACTGGATTGGTgtaaaacagtctgaacaaaatgtgtaaagagaaacattaacaaTTTTTCTTACTCGTCACTACTCTGGGGgcaggcgggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110881 lncRNA upstream 20119 21698331 ~ 21700510 (+) False G82266
TU110887 lncRNA upstream 20119 21698331 ~ 21700510 (+) False G82266
TU110875 lncRNA upstream 20119 21698719 ~ 21700510 (+) False G82266
TU110880 lncRNA upstream 20119 21698719 ~ 21700510 (+) False G82266
TU110884 lncRNA upstream 20119 21698719 ~ 21700510 (+) True G82266
TU110952 lncRNA downstream 65796 21787174 ~ 21788940 (+) True G82311
TU110989 lncRNA downstream 147001 21868379 ~ 21869894 (+) True G82345
TU110993 lncRNA downstream 156677 21878055 ~ 21878741 (+) True G82349
TU110979 lncRNA downstream 159159 21880537 ~ 21881002 (+) True G82336
TU111046 lncRNA downstream 353164 22074542 ~ 22079050 (+) True G82383
XM_022672931.1 mRNA upstream 48489 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 424373 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 441491 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 441491 21194709 ~ 21279138 (+) False LOC103041063
XM_022672920.1 mRNA upstream 531361 21156143 ~ 21189268 (+) False LOC103047712
XM_022672936.1 mRNA downstream 192848 21914226 ~ 21926373 (+) True tmem87a
XM_007253814.3 mRNA downstream 206188 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 234630 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 279235 22000613 ~ 22046430 (+) False numb
XM_022672937.1 mRNA downstream 279236 22000614 ~ 22046430 (+) True numb
TU110179 other upstream 2046991 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2054582 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2789875 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3199682 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3256533 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 636266 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1509052 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2154061 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2154061 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2188304 23909682 ~ 23920698 (+) True G82811

Expression Profile