RNA id: TU110952


Basic Information

Item Value
RNA id TU110952
length 874
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G82311
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21787174 ~ 21788940 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTAAACATTTTCAGTAGTTTTATTGAAAAATGCCTCTTCTGattcagaaataaataagaaaaaaatgctgtgGAATTCACAATGTGCAGTTAAAACATAACGGAGCAATTCTATGACCATAGTCTTGCAACAAATTCCAACTGCTTTTGAGATTgataaaacaaaaggaaaaactatattctgtttttaaaatgtacttactAAATATACAACACAGTCATGCAATTCCATCTTTGGTACAAATGAGCTGTGAGTTGGTATACAACAGATAAATATTTAGAATAATGAAACAAAAGCCAGATCTAACAAGGTCTTTAAAATGAGGATGGAATTACAACTAATAGCCTTCCCTGATGACAAGGAAggcataacaaaataataatggaATTAAAGGTATAAAGGTTATGTTGGCAGTCAGCAAGAAGCAAGTTATGAGGCACAAGCTTGATGATGGATGTTAAACCATTTTAGTTGTCTGTTTAATTGAAACTCATTTACAAGGcacaattagtttatttacaCCTCACCCCCCATCCACTGGTGAACTCAGTTATGAAATCTTCATGGTTAGTAGTTTACATGCTTCTTCAGCAAAGGAAGCTCACTCTTGCTGTTTGTTGCTTTGGAGTTCAAGATGCATCAGGCCACTGTACGTGGCCATCACTGTTGCCTGCCTGATAGAGTAGCGGTCAGCTGGTGTTAGTGGCAGTCCAGTCCTTtctttggtttgatttggttttagAGTTGGTCAGCAAATGTTCATTAATGAAATCCATGATGGTTACCCTTAAAAGCTTATTAGCAAGTGTGCTGATCTCTcagacacagttttttttttgaggatttCAATGTTTAAGGGCAGGCAGCTTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110891 lncRNA upstream 65796 21720629 ~ 21721378 (+) False G82270
TU110892 lncRNA upstream 65796 21720629 ~ 21721378 (+) True G82270
TU110881 lncRNA upstream 86664 21698331 ~ 21700510 (+) False G82266
TU110989 lncRNA downstream 79439 21868379 ~ 21869894 (+) True G82345
TU110993 lncRNA downstream 89115 21878055 ~ 21878741 (+) True G82349
TU110979 lncRNA downstream 91597 21880537 ~ 21881002 (+) True G82336
TU111046 lncRNA downstream 285602 22074542 ~ 22079050 (+) True G82383
TU111124 lncRNA downstream 349556 22138496 ~ 22141716 (+) True G82438
XM_022672931.1 mRNA upstream 115034 21520907 ~ 21672140 (+) True ralgapa2
XM_007252546.2 mRNA upstream 490918 21282603 ~ 21296256 (+) True gpr68
XM_022672922.1 mRNA upstream 508036 21194708 ~ 21279138 (+) True LOC103041063
XM_007252545.3 mRNA upstream 508036 21194709 ~ 21279138 (+) False LOC103041063
XM_022672920.1 mRNA upstream 597906 21156143 ~ 21189268 (+) False LOC103047712
XM_022672936.1 mRNA downstream 125286 21914226 ~ 21926373 (+) True tmem87a
XM_007253814.3 mRNA downstream 138626 21927566 ~ 21948191 (+) True vps39
XM_007253813.3 mRNA downstream 167068 21956008 ~ 21994947 (+) True galnt16
XM_007253808.3 mRNA downstream 211673 22000613 ~ 22046430 (+) False numb
XM_022672937.1 mRNA downstream 211674 22000614 ~ 22046430 (+) True numb
TU110179 other upstream 2113536 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2121127 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 2856420 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3266227 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3323078 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 568704 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 1441490 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 2086499 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 2086499 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 2120742 23909682 ~ 23920698 (+) True G82811

Expression Profile