RNA id: TU111178


Basic Information

Item Value
RNA id TU111178
length 446
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G82487
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22355641 ~ 22356086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCGGTACAACACATAATGTATGGGATATCACGCCCTTGCGTGTCTGGCTGAAGACACCTTTAATCACGCCTAAAAGGCAGATGATGCATAGTGACGAGGGCAGGAGGGCCCGCCCCCTGCATATAACCCCACGTCACCAGCATCACTCCTCAGTTCTTATGCTCTTCACTTCGCTGAGAACACCTTACACCTTTTCTGCTAGTCTAGTTAGCTCAATTCAGCAATCCTTCGGATAACTTAACTGTTCCATTAGGCAAGCACGACAACAACCTCATATTGGTGAGTCGTCTTCCCGCGGAGCGTTATTTAAAGGATTTTGCTGCTTTTAAATCTGCTTTGCAAGTCTCGGGGCTAGCCTGTTTAGCCTCGCTAACAGCTGCCTAAAATGAGCTCGCAAGCCAACCTTACCTCTCAGCCTGGCAAGAAAGCCTCCCGTCCTTGTCCT

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111167 lncRNA upstream 70300 22285063 ~ 22285341 (+) True G82476
TU111156 lncRNA upstream 120750 22234503 ~ 22234891 (+) True G82465
TU111124 lncRNA upstream 213925 22138496 ~ 22141716 (+) True G82438
TU111046 lncRNA upstream 276591 22074542 ~ 22079050 (+) True G82383
TU110979 lncRNA upstream 474639 21880537 ~ 21881002 (+) True G82336
TU111186 lncRNA downstream 10154 22366240 ~ 22368956 (+) True G82493
XR_002650283.1 lncRNA downstream 37909 22393995 ~ 22409035 (+) True LOC111193141
TU111213 lncRNA downstream 193779 22549865 ~ 22551789 (+) True G82515
TU111288 lncRNA downstream 771867 23127953 ~ 23194290 (+) True G82579
TU111292 lncRNA downstream 807927 23164013 ~ 23165063 (+) True G82583
XM_007253795.3 mRNA upstream 220344 22130946 ~ 22135297 (+) True tmem179
XM_015607013.2 mRNA upstream 227500 22111114 ~ 22128141 (+) True LOC103041179
XM_015607014.2 mRNA upstream 227500 22111114 ~ 22128141 (+) False LOC103041179
XM_007253796.3 mRNA upstream 251990 22081687 ~ 22103651 (+) True ubr1
XM_007253811.3 mRNA upstream 300230 22047619 ~ 22055411 (+) True exd2
XM_007253788.3 mRNA downstream 235483 22591569 ~ 22594357 (+) True LOC103037751
XM_022672482.1 mRNA downstream 271218 22627304 ~ 22637793 (+) True edrf1
XM_022672943.1 mRNA downstream 282647 22638733 ~ 22663127 (+) True tonsl
XM_007253783.3 mRNA downstream 330645 22686731 ~ 22692160 (+) True LOC103036290
XM_007253777.3 mRNA downstream 354996 22711082 ~ 22844378 (+) True akap6
TU110179 other upstream 2682003 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 2689594 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 3424887 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 3834694 18511622 ~ 18520947 (+) False LOC103033848
TU109877 other upstream 3891545 18460130 ~ 18464096 (+) False LOC103035760
TU111179 other downstream 1558 22357644 ~ 22358135 (+) True G82488
TU111323 other downstream 874344 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 1519353 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 1519353 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 1553596 23909682 ~ 23920698 (+) True G82811

Expression Profile