RNA id: TU111288


Basic Information

Item Value
RNA id TU111288
length 1190
lncRNA type sense_over
GC content 0.44
exon number 7
gene id G82579
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23127953 ~ 23194290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtaaaaaaaaaaaatTTACAGATAATTTACATAAATGTGCATAAGTACAGAGATCTTCTAAAACATCCCCACATTCTCACCTGTGTTTCAATATTACCCTCCATACAGTGACTTTAGGAAAAGGGGCATCAGCCAGAGTCttttagcacacacacatcatcCACTCAGCAATGGCTTGCTAGGATGTTAAAGAAATGGTAGACCTCATCTTTATCAAACACTGCCACTTCAGTAGAACACTCTGTACACTTGACTGGATGATAAATCTCTTCCTCGTCCATTCCACTCAGTCTGGAGTCAGTCAGACCTGCCTCTGCCTCATTCTCTGTAGCTGTGGACCCCTGATGGCTTTTCTTCTTGCGTCGGTTCTTCTGTTTGGCTGCTTTATACCTCAGGACTTCATCTTTACTCACTGTACAGTTCATCACAAACATGGCTCTGTATTGCGTTCTATACTTCTCATGTCTCTGACAGTCTAGACATAGCGTAGTCATACACGCAGGACAGTTGAGGACAGCATCACTGCTTGGGAGGGGGTGGGATTTGTTTCTTTTGTCTGCAGATGATCTAAACCTTCTGTGGCTTCTGTACTCTTTTCTCCTGGCATCTACCCACGCCTGATCCCGATCATCTTCATCTGGGTCATATAATAACTCATCATTGGTAAGTACAGTGCGCTGCTTTCTCCTCTGATTCTTGGAGACACCGGGCAAAGCATCCtcatctgaatctgaatcaaaGTATATGTTATCGTACTGCGGAGGTTGTGTTCTGGTCGTGTTTTGTGTTGAAGCATTGTCACCAGTCTGAGAGGCCTCGCTTGAGAAGATGGAAAGGTCCAGTTGCCCTCCATGGATTTCATTGTGCTGCTCAGCTCTGcctccatctctttctcaaACTCATCACCACTGGATGACTCACTCTCCCCCGTCAAATACTCTCGGATGAGCTTCTTCTTCTGATCTGGAGTTCCATTAAGAAGAATGTCGAGCTCATCTTCGGAGCTGACTGCTCTTTCTTCATCACTCGGCTCCTCAATCTCGTAAGAATCATATTCATCTTTTCGgttcatttttttctcaatccagaaaatggaaataaacaaataaacacacaggaaCGCAATAAAAGCACAAACAGGCGAGAGAGCAGCGCTGTGTCTTTCCGGAGCAAGACTCTTCCACGtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111213 lncRNA upstream 576164 22549865 ~ 22551789 (+) True G82515
XR_002650283.1 lncRNA upstream 718918 22393995 ~ 22409035 (+) True LOC111193141
TU111186 lncRNA upstream 758997 22366240 ~ 22368956 (+) True G82493
TU111178 lncRNA upstream 771867 22355641 ~ 22356086 (+) True G82487
TU111167 lncRNA upstream 842612 22285063 ~ 22285341 (+) True G82476
TU111297 lncRNA downstream 10525 23204815 ~ 23205444 (+) True G82588
TU111308 lncRNA downstream 14205 23208495 ~ 23208799 (+) True G82596
TU111319 lncRNA downstream 31475 23225765 ~ 23226910 (+) True G82606
TU111497 lncRNA downstream 278914 23473204 ~ 23473455 (+) True G82748
TU111516 lncRNA downstream 304429 23498719 ~ 23499013 (+) True G82754
XM_007253777.3 mRNA upstream 283575 22711082 ~ 22844378 (+) True akap6
XM_007253783.3 mRNA upstream 435793 22686731 ~ 22692160 (+) True LOC103036290
XM_022672943.1 mRNA upstream 464826 22638733 ~ 22663127 (+) True tonsl
XM_022672482.1 mRNA upstream 490160 22627304 ~ 22637793 (+) True edrf1
XM_007253788.3 mRNA upstream 533596 22591569 ~ 22594357 (+) True LOC103037751
XM_007240478.3 mRNA downstream 47881 23242171 ~ 23248849 (+) True srp54
XM_015603404.2 mRNA downstream 47881 23242171 ~ 23248849 (+) False srp54
XM_007240480.3 mRNA downstream 56370 23250660 ~ 23267862 (+) True sec23a
XM_007251888.3 mRNA downstream 114755 23309045 ~ 23312366 (+) True clec14a
XM_007251890.3 mRNA downstream 171141 23365431 ~ 23368635 (+) True foxa1
TU111179 other upstream 769818 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3454315 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3461906 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4197199 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 4607006 18511622 ~ 18520947 (+) False LOC103033848
TU111323 other downstream 36140 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 681149 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 681149 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 715392 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 945099 24139389 ~ 24142232 (+) True G82853

Expression Profile