RNA id: TU111292


Basic Information

Item Value
RNA id TU111292
length 550
lncRNA type inter_gene
GC content 0.28
exon number 3
gene id G82583
representative True

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 23164013 ~ 23165063 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaaagaaatctgtctgatatcacaggtcaatttcagatagtcctgatagtacactacttgtatgtttcactcaattactatcagaacattttgatgtgtcattttaaaataaaggccctttaaattataacatttatgtaattttacacaatatttagACTGTtcttaaaagaaatctgtctgatatcacaggtcaatttcagatagtcctgatagtacactacttgtatgtttcactcaattactatcagaacattttgatgtgtcattttaaaataaaagccctttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaagaaagctgtctgatatcacagttcaatttcatatagtcctgatagtacactacttgtatgtgtcactcacttaataacagaacattttgatgtgtcatttcaaaataagggccatttaaattgtaacatttatgtaattttacacaatgtttagactgttattaaaagaaatctgtctgatatcacagttcaatttcagatagtcctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111213 lncRNA upstream 612224 22549865 ~ 22551789 (+) True G82515
XR_002650283.1 lncRNA upstream 754978 22393995 ~ 22409035 (+) True LOC111193141
TU111186 lncRNA upstream 795057 22366240 ~ 22368956 (+) True G82493
TU111178 lncRNA upstream 807927 22355641 ~ 22356086 (+) True G82487
TU111167 lncRNA upstream 878672 22285063 ~ 22285341 (+) True G82476
TU111297 lncRNA downstream 39752 23204815 ~ 23205444 (+) True G82588
TU111308 lncRNA downstream 43432 23208495 ~ 23208799 (+) True G82596
TU111319 lncRNA downstream 60702 23225765 ~ 23226910 (+) True G82606
TU111497 lncRNA downstream 308141 23473204 ~ 23473455 (+) True G82748
TU111516 lncRNA downstream 333656 23498719 ~ 23499013 (+) True G82754
XM_007253775.3 mRNA upstream 9428 22857844 ~ 23154585 (+) True npas3
XM_007253777.3 mRNA upstream 319635 22711082 ~ 22844378 (+) True akap6
XM_007253783.3 mRNA upstream 471853 22686731 ~ 22692160 (+) True LOC103036290
XM_022672943.1 mRNA upstream 500886 22638733 ~ 22663127 (+) True tonsl
XM_022672482.1 mRNA upstream 526220 22627304 ~ 22637793 (+) True edrf1
XM_007240478.3 mRNA downstream 77108 23242171 ~ 23248849 (+) True srp54
XM_015603404.2 mRNA downstream 77108 23242171 ~ 23248849 (+) False srp54
XM_007240480.3 mRNA downstream 85597 23250660 ~ 23267862 (+) True sec23a
XM_007251888.3 mRNA downstream 143982 23309045 ~ 23312366 (+) True clec14a
XM_007251890.3 mRNA downstream 200368 23365431 ~ 23368635 (+) True foxa1
TU111179 other upstream 805878 22357644 ~ 22358135 (+) True G82488
TU110179 other upstream 3490375 19673127 ~ 19673638 (+) True G81763
TU110177 other upstream 3497966 19665736 ~ 19666047 (+) True G81761
TU110107 other upstream 4233259 18930238 ~ 18930754 (+) True G81704
XR_002650340.1 other upstream 4643066 18511622 ~ 18520947 (+) False LOC103033848
TU111323 other downstream 65367 23230430 ~ 23231318 (+) True G82609
TU111569 other downstream 710376 23875439 ~ 23877767 (+) False timm9
TU111570 other downstream 710376 23875439 ~ 23877767 (+) True timm9
TU111581 other downstream 744619 23909682 ~ 23920698 (+) True G82811
TU111651 other downstream 974326 24139389 ~ 24142232 (+) True G82853

Expression Profile